Job Description P0A6P9 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 62 Aligned Residues 311 % Identity 19% Template c2fkpC_ PDB info PDB header:isomerase Chain: C: PDB Molecule:n-acylamino acid racemase; PDBTitle: the mutant g127c-t313c of deinococcus radiodurans n-2 acylamino acid racemase Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		M	S	K	I	V	K	I	I	G	R	E	I	.	I	D	S	R	G	N	P	T	V	E	A	E	V	H	L	E	G	G	F	V	G	M	A	A	A	P	S	G	A	S	T	G	S	R	E	A	L	E	L	R	D	G	D	K	S	R	F	L	G	K	G	V	T	K	A	V	A	A	V	N	G	P	I	A	Q	A	L
Query Conservation														.
Alig confidence														.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	F	K	I	E	A	A	E	I	V	V	A	R	L	P	L	K	T	H	K	V	V	P	L	L	I	L	H	G	E	G	V	Q	G	V	A	E	G	T	M	E	A	R	P	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R	E	E	T	I	A	G	A	L	D	L	L	R	G	T	F	L	P	A	I
Template Known Secondary structure																	B														T	T										B	S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S		B											T
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.															.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	K	D	A	K	D	Q	A	G	I	D	K	I	M	I	D	L	D	G	T	E	N	K	S	K	F	G	A	N	A	I	L	A	V	S	L	A	N	A	K	A	A	A	A	A	K	G	M	P	L	Y	E	H	I	A	E	L	N	G	T	P	G	K	Y	S	M	P	V	P	M	M	N	I	I	N	G	G	E	H
Query Conservation
Alig confidence																								.	.	.	.	.	.	.																																													.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.																																													.	.	.	.	.	.	.
Template Sequence		L	G	Q	T	F	A	N	P	E	A	V	S	D	A	L	G	S	Y	R	G	N	R	.	.	.	.	.	.	.	M	A	R	A	M	V	E	M	A	A	W	D	L	W	A	R	T	L	G	V	P	L	C	T	L	L	G	G	H	K	E	Q	V	E	V	G	V	S	L	G	I	Q	A	D	.	.	.	.	.	.	.
Template Known Secondary structure		T	T				S	S								T		S			S			.	.	.	.	.	.	.																			T		B						T				S				B								S	S	.	.	.	.	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.																																													.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.								.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	N	N	V	D	I	Q	E	F	M	I	Q	P	V	G	A	K	T	V	K	E	A	I	R	M	G	S	E	V	F	H	H	L	A	K	V	L	K	A	K	G	M	N	T	A	V	G	D	E	G	G	Y	A	P	N	L	G	S	N	A	E	A	L	A	V	I	A	E	A	V	K	A	A	G	Y	E	L	G	K
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.														.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.														.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	A	T	V	D	L	V	R	R	H	V	E	Q	G	Y	R	R	I	K	L	K	I	K	P	.	.	.	.	.	G	W	D	V	Q	P	V	R	A	T	R	E	A	.	.	.	.	.	.	.	.	F	P
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T	T		S							B	T	.	.	.	.	.	T	B	S											.	.	.	.	.	.	.	.		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.														.	.	.	.	.	.	.	.
Template SS confidence
																													149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.						.	.	.	.	.	.	180	.	.	.	.	.	.									.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	T	L	A	M	D	C	A	A	S	E	F	Y	K	D	G	K	Y	V	L	A	G	E	G	N	K	A	F	T	S	E	E	F	T	H	F	L	E	E	L	T	K	Q	Y	P	I	V	S	I	E	D	G	L	D	E	S	D	W	D	G	F	A	Y	Q	T	K	V	L	G	D	K	I	Q	L	V	G	D	D	L
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.																																					.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.																																					.	.	.
Template Sequence		D	I	R	L	T	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	S	A	Y	T	L	A	D	A	G	R	L	.	.	R	Q	L	D	E	Y	D	L	T	Y	I	E	Q	P	L	A	W	D	D	L	V	D	H	A	E	L	A	R	R	I	R	T	P	L	C	L	.	.	.	D	E
Template Known Secondary structure		S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T				G	G	G					.	.		G	G	G	G	G			S						S		T	T		S											S	S					.	.	.	S	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.																																					.	.	.
Template SS confidence
		189	190	.	.	.	.	.																		.	.	.	.	200	.	.	.	.	.	.	.	.			.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.				.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	T	N	T	K	I	L	K	E	G	I	E	K	G	I	A	N	S	I	L	I	K	F	N	Q	I	G	S	L	T	E	T	L	A	A	I	K	M	A	K	D	A	G	Y	T	A	V	I	S	H	R	S	G	E	T	E	D	A	T	I	A	D	L	A	V	G	T	A	A	G	Q	I	K	T	G	S	M	S	R
Query Conservation
Alig confidence																																																							.
Template Conservation																																																							.
Template Sequence		S	V	A	S	A	S	D	A	R	K	A	L	A	L	G	A	G	G	V	I	N	L	K	V	A	R	V	G	G	H	A	E	S	R	R	V	H	D	V	A	Q	S	F	G	A	P	V	W	C	G	G	M	L	.	E	S	G	I	G	R	A	H	N	I	H	L	S	C	L	S	N	F	R	L	P	G	D	T	S	S
Template Known Secondary structure		T			S											T	S		S						T	T	T	T	T	S														T	T										.													T	T	S	T	T	B		S		B	S
Template Predicted Secondary structure																																																							.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	R
Template Known Secondary structure		G	G	G
Template Predicted Secondary structure
Template SS confidence
		326	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions