Job Description P0A6P9 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 96 Aligned Residues 313 % Identity 19% Template c2dw7G_ PDB info PDB header:lyase Chain: G: PDB Molecule:bll6730 protein; PDBTitle: crystal structure of d-tartrate dehydratase from2 bradyrhizobium japonicum complexed with mg++ and meso-3 tartrate Resolution 2.50 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.											.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.
Query Sequence		K	I	V	K	I	I	G	R	E	I	I	D	S	R	.	.	.	.	.	.	.	.	.	.	G	N	P	T	V	E	A	E	V	H	L	E	G	G	F	V	G	M	A	A	A	P	S	G	A	S	T	G	S	R	E	A	L	E	L	R	D	G	D	K	S	R	F	L	G	K	G	V	T	K	A	V	A	A	V	N
Query Conservation																.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	I	V	D	V	R	E	I	T	K	P	I	S	S	P	I	R	N	A	Y	I	D	F	T	K	M	T	T	S	L	V	A	V	V	T	D	V	V	R	E	G	K	R	V	V	G	Y	G	F	N	S	N	G	R	Y	G	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	I	R
Template Known Secondary structure																S		B		S	S		B		T	T															T	T											T	T	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.																			.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.											.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.
Query Sequence		G	P	I	A	Q	A	L	I	G	K	D	A	.	.	.	.	.	.	.	.	.	.	K	D	Q	A	G	I	D	K	I	M	I	D	L	D	G	T	E	N	K	S	K	F	G	A	N	A	I	L	A	V	S	L	A	N	A	K	A	A	A	A	A	K	G	M	P	L	Y	E	H	I	A	E	L	N	G	T	P	G
Query Conservation														.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																																								.
Template Sequence		E	R	F	A	S	R	I	L	E	A	D	P	K	K	L	L	N	E	A	G	D	N	L	D	P	D	K	V	W	A	A	M	M	I	N	E	K	P	.	G	G	H	G	E	R	S	V	A	V	G	T	I	D	M	A	V	W	D	A	V	A	K	I	A	G	K	P	L	F	R	L	L	A	E	R	H	G	V	K	A
Template Known Secondary structure			T							T	S		G	G	G	S	B		S	S	S	S	S	B										T	T	T			S	.	S			S	S																				T	T	S	B										T	S
Template Predicted Secondary structure																																								.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Y	S	M	P	V	P	M	M	N	I	I	N	G	G	E	H	A	D	N	N	V	D	I	Q	E	F	M	I	Q	P	V	G	A	K	T	V	K	E	A	I	R	M	G	S	E	V	F	H	H	L	A	K	V	L	K	A	K	G	M	N	T	A	V	G	D	E	G	G	Y	A	P	N	L	G	S	N	A	E	A
Query Conservation
Alig confidence					.	.															.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.															.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	P	R	.	.	V	F	V	Y	A	A	G	G	Y	Y	Y	P	G	K	.	.	.	.	.	.	.	.	.	.	.	.	G	L	S	M	L	R	G	E	M	R	G	Y	L	D	R	G	Y	N	V	V	K	M	K	I	G	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	E	E	D	R	M	R
Template Known Secondary structure					.	.										B		T	T		.	.	.	.	.	.	.	.	.	.	.	.															T	T		S							S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.															.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		145	.	.			.	.	150	.	.	.	.	.	.	.	.	.	160	.													.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.															.	190	.	.	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	V	I	A	E	A	V	K	A	A	G	Y	E	L	G	K	D	I	T	L	A	M	D	C	A	A	S	E	F	Y	K	D	G	K	Y	V	L	A	G	E	G	N	K	A	F	T	S	E	E	F	T	H	F	L	E	E	L	T	K	Q	Y	P	I	V	S	I	E	D	G	L	D	E	S	D	W	D	G	F	A
Query Conservation
Alig confidence										.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation										.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Sequence		I	E	A	V	L	E	E	I	.	.	.	.	.	.	.	G	K	D	A	Q	L	A	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	G	R	F	N	L	E	T	G	I	A	Y	A	K	M	L	.	R	D	Y	P	L	F	W	Y	E	E	V	G	D	P	L	D	Y	A	L	Q	A
Template Known Secondary structure										.	.	.	.	.	.	.	T	T	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T															.	T	T	S			S						S		T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template SS confidence
		197	.	.	200	.	.	.	.								.	.	.	.	.	210	.	.	.																		.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230		.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.					.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.
Query SS confidence																																				.	.	.	.
Query Sequence		Y	Q	T	K	V	L	G	D	K	I	Q	L	V	G	D	D	L	F	V	T	N	T	K	I	L	K	E	G	I	E	K	G	I	A	.	.	.	.	N	S	I	L	I	K	F	N	Q	I	G	S	L	T	E	T	L	A	A	I	K	M	A	K	D	A	G	Y	T	A	V	I	S	H	R	S	G	E	T	E	D	A
Query Conservation																																				.	.	.	.
Alig confidence														.	.	.																				.	.	.	.																																						.	.
Template Conservation														.	.	.																																																													.	.
Template Sequence		A	L	A	E	F	Y	P	G	P	M	A	T	.	.	.	G	E	N	L	F	S	H	Q	D	A	R	N	L	L	R	Y	G	G	M	R	P	D	R	D	W	L	Q	F	D	C	A	L	S	Y	G	L	C	E	Y	Q	R	T	L	E	V	L	K	T	H	G	W	S	P	S	R	C	I	P	H	G	.	.	G	H	Q
Template Known Secondary structure				T	T	T			S					.	.	.		T	T			S											S				T	T	T							G	G	G	T	T															T	T			G	G	G	B			S	S	.	.
Template Predicted Secondary structure														.	.	.																																																													.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.				.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.			.	.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	A	D	L	A	V	G	T	A	A	G	Q	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	S	L	N	I	A	A	G	L	G	L	G	G	N
Template Known Secondary structure											T		S
Template Predicted Secondary structure
Template SS confidence
		327	.	.	330	.	.	.	.	.	.	.	.	.	340

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions