Job Description P0A6P9 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 84 Aligned Residues 299 % Identity 18% Template c1sjaA_ PDB info PDB header:lyase, isomerase Chain: A: PDB Molecule:n-acylamino acid racemase; PDBTitle: x-ray structure of o-succinylbenzoate synthase complexed2 with n-acetylmethionine Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.													.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	I	V	K	I	I	G	R	E	I	I	D	S	.	.	.	.	.	.	.	.	.	.	.	.	R	G	N	P	T	V	E	A	E	V	H	L	E	G	G	F	V	G	M	A	A	A	P	S	G	A	S	T	G	S	R	E	A	L	E	L	R	D	G	D	K	S	R	F	L	G	K	G	V	T	K	A	V	A	A
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.																.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	L	S	G	V	E	L	R	R	V	Q	M	P	L	V	A	P	F	R	T	S	F	G	T	Q	S	V	R	E	L	L	L	L	R	A	V	T	P	A	G	.	E	G	W	G	E	C	V	T	M	A	G	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	S	E	Y	N	D	G	A	E	H	V
Template Known Secondary structure																						T	T																S	S		.									B	S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S		B
Template Predicted Secondary structure																																										.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.															.	.	.	.	.	60	.	.	.	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	G	P	I	A	Q	A	L	I	G	K	D	A	K	D	Q	A	G	I	D	K	I	M	I	D	L	D	G	T	E	N	K	S	K	F	G	A	N	A	I	L	A	V	S	L	A	N	A	K	A	A	A	A	A	K	G	M	P	L	Y	E	H	I	A	E	L	N	G	T	P	G	K	Y	S	M	P	V	P	M
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Template Sequence		L	R	H	Y	L	I	P	A	L	L	A	A	E	D	I	T	A	A	K	V	T	P	L	L	A	K	F	K	G	H	R	.	.	.	.	.	.	.	M	A	K	G	A	L	E	M	A	V	L	D	A	E	L	R	A	H	E	R	S	F	A	A	E	L	G	S	V	R	D	.	.	.	.	.	.	.	S	V	P	C
Template Known Secondary structure					T							T	S	S	S											T	T	S					.	.	.	.	.	.	.																			T		B						T				S	.	.	.	.	.	.	.				B
Template Predicted Secondary structure																																	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.								.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.								.	130	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	I	I	N	G	G	E	H	A	D	N	N	V	D	I	Q	E	F	M	I	Q	P	V	G	A	K	T	V	K	E	A	I	R	M	G	S	E	V	F	H	H	L	A	K	V	L	K	A	K	G	M	N	T	A	V	G	D	E	G	G	Y	A	P	N	L	G	S	N	A	E	A	L	A	V	I	A	E	A	V
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	V	S	V	G	I	M	D	T	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	L	D	V	V	G	G	Y	L	D	E	G	Y	V	R	I	K	L	K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	P	G	W	D	V	E	P	V	R	A	V	R	E	R	F
Template Known Secondary structure									S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T		S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B	T	T	B	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.																.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.																		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	A	G	Y	E	L	G	K	D	I	T	L	A	M	D	C	A	A	S	E	F	Y	K	D	G	K	Y	V	L	A	G	E	G	N	K	A	F	T	S	E	E	F	T	H	F	L	E	E	L	T	K	Q	Y	P	I	V	S	I	E	D	G	L	D	E	S	D	W	D	G	F	A	Y	Q	T	K	V	L	G	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Conservation		.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template Sequence		.	.	.	.	.	.	.	G	D	D	V	L	L	Q	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	T	A	Y	T	L	G	D	A	P	Q	L	A	R	.	.	L	D	P	F	G	L	L	L	I	E	Q	P	L	E	E	E	D	V	L	G	H	A	E	L	A	R	R	I	Q	T
Template Known Secondary structure		.	.	.	.	.	.	.		S	S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T		B		G	G	G						T	.	.	T	G	G	G			S						B		T	T									T	T	T		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.
Template SS confidence
									181	.	.	.	.	.	.	.	.																		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	Q	L	V	G	D	D	L	F	V	T	N	T	K	I	L	K	E	G	I	E	K	G	I	A	N	S	I	L	I	K	F	N	Q	I	G	S	L	T	E	T	L	A	A	I	K	M	A	K	D	A	G	Y	T	A	V	I	S	H	R	S	G	E	T	E	D	A	T	I	A	D	L	A	V	G	T	A	A	G
Query Conservation
Alig confidence						.	.	.																																																						.
Template Conservation						.	.	.																																																						.
Template Sequence		P	I	C	L	.	.	.	D	E	S	I	V	S	A	R	A	A	A	D	A	I	K	L	G	A	V	Q	I	V	N	I	K	P	G	R	V	G	G	Y	L	E	A	R	R	V	H	D	V	C	A	A	H	G	I	P	V	W	C	G	G	.	M	I	E	T	G	L	G	R	A	A	N	V	A	L	A	S	L	P	N
Template Known Secondary structure						.	.	.	S	T	T			S											T			S						T	T	T	T	T	S														T	T								.		S														T	S	T	T
Template Predicted Secondary structure						.	.	.																																																						.
Template SS confidence
		235	.	.	.				.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		391	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	T
Template Known Secondary structure		B
Template Predicted Secondary structure
Template SS confidence
		311	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions