Job Description P0A6P9 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 83 Aligned Residues 296 % Identity 16% Template c1mraA_ PDB info PDB header:racemase Chain: A: PDB Molecule:mandelate racemase; PDBTitle: mandelate racemase mutant d270n co-crystallized with (s)-atrolactate Resolution 2.10 Å

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		3	.	.	.	.	.	.	10	.	.													.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	I	V	K	I	I	G	R	E	I	.	.	.	.	.	.	.	.	.	.	.	.	I	D	S	R	G	N	P	T	V	E	A	E	V	H	L	E	G	G	F	V	G	M	A	A	A	P	S	G	A	S	T	G	S	R	E	A	L	E	L	R	D	G	D	K	S	R	F	L	G	K	G	V	T	K	A	V	A	A
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	I	T	G	L	R	T	R	A	V	N	V	P	L	A	Y	P	V	H	T	A	V	G	T	V	G	T	A	P	L	V	L	I	D	L	A	T	S	A	G	V	V	G	H	S	Y	L	F	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	T	P	V	A	L	K	S	L	K	Q	L
Template Known Secondary structure		B														S	S					S	S				S	S											T	T	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	G	G	G
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.																				.	.	.	.	.	.	60	.	.	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	G	P	I	A	Q	A	L	I	G	K	D	A	K	D	Q	A	G	I	D	K	I	M	I	D	L	D	G	T	E	N	K	S	K	F	G	A	N	A	I	L	A	V	S	L	A	N	A	K	A	A	A	A	A	K	G	M	P	L	Y	E	H	I	A	E	L	N	G	T	P	G	K	Y	S	M	P	V	P	M
Query Conservation
Alig confidence					.											.																																																							.	.	.	.	.	.	.
Template Conservation					.											.																																																							.	.	.	.	.	.	.
Template Sequence		L	D	D	.	M	A	A	M	I	V	N	E	P	L	.	A	P	V	S	L	E	A	M	L	A	K	R	F	C	L	A	G	Y	T	G	L	I	R	M	A	A	A	G	I	D	M	A	A	W	D	A	L	G	K	V	H	E	T	P	L	V	K	L	L	G	A	N	A	R	.	.	.	.	.	.	.	P	V	Q	A
Template Known Secondary structure					.						T	T	S	B	S	.													T	T	T	T		S	S																						T	T		B					T	T					.	.	.	.	.	.	.
Template Predicted Secondary structure					.											.																																																							.	.	.	.	.	.	.
Template SS confidence
		66	.	.		.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.								.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		M	N	I	I	N	G	G	E	H	A	D	N	N	V	D	I	Q	E	F	M	I	Q	P	V	G	A	K	T	V	K	E	A	I	R	M	G	S	E	V	F	H	H	L	A	K	V	L	K	A	K	G	M	N	T	A	V	G	D	E	G	G	Y	A	P	N	L	G	S	N	A	E	A	L	A	V	I	A	E	A	V
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	D	S	H	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	G	V	K	L	A	T	E	R	A	V	T	A	A	E	L	G	F	R	A	V	K	T	K	I	G	Y	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	D	Q	D	L	A	V	V	R	S	I	R	Q	A	V
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																T	T		S									S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		137	.	.	140	.																	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170															.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	A	G	Y	E	L	G	K	D	I	T	L	A	M	D	C	A	A	S	E	F	Y	K	D	G	K	Y	V	L	A	G	E	G	N	K	A	F	T	S	E	E	F	T	H	F	L	E	E	L	T	K	Q	Y	P	I	V	S	I	E	D	G	L	D	E	S	D	W	D	G	F	A	Y	Q	T	K	V	L	G	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation		.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Sequence		.	.	.	.	.	.	.	G	D	D	F	G	I	M	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	N	Q	S	L	D	V	P	A	A	I	K	R	S	Q	A	L	.	Q	Q	E	G	V	T	W	I	E	E	P	T	L	Q	H	D	Y	E	G	H	Q	R	I	Q	S	K	L	N	V
Template Known Secondary structure		.	.	.	.	.	.	.		S	S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T		S													.				T		S						S		T	T											T		S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template SS confidence
									187	.	.	190	.	.	.	.	.																		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	Q	L	V	G	D	D	L	F	V	T	N	T	K	I	L	K	E	G	I	E	K	G	I	A	N	S	I	L	I	K	F	N	Q	I	G	S	L	T	E	T	L	A	A	I	K	M	A	K	D	A	G	Y	T	A	V	I	S	H	R	S	G	E	T	E	D	A	T	I	A	D	L	A	V	G	T	A	A
Query Conservation
Alig confidence						.	.	.																																																					.	.	.	.	.
Template Conservation						.	.	.																																																					.	.	.	.	.
Template Sequence		P	V	Q	M	.	.	.	G	E	N	W	L	G	P	E	E	M	F	K	A	L	S	I	G	A	C	R	L	A	M	P	N	A	M	K	I	G	G	V	T	G	W	I	R	A	S	A	L	A	Q	Q	F	G	I	P	M	S	S	H	.	.	.	.	.	L	F	Q	E	I	S	A	H	L	L	A	A	T	P	T
Template Known Secondary structure						.	.	.		T	T			S										T	T			S					B	T	T	T	T	T																T			B			B	.	.	.	.	.	S											T		T	T
Template Predicted Secondary structure						.	.	.																																																					.	.	.	.	.
Template SS confidence
		242	.	.	.				.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.						.	.	300	.	.	.	.	.	.	.	.	.	310	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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