Job Description P0A6P9 Confidence 100.00% Date Wed Jan 25 15:20:15 GMT 2012 Rank 52 Aligned Residues 314 % Identity 18% Template c1kkoB_ PDB info PDB header:lyase Chain: B: PDB Molecule:3-methylaspartate ammonia-lyase; PDBTitle: crystal structure of citrobacter amalonaticus2 methylaspartate ammonia lyase Resolution 1.33 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.					.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.
Query SS confidence																																														.	.	.	.
Query Sequence		T	V	E	A	E	V	H	L	E	G	G	F	V	G	M	A	A	A	P	S	G	A	S	T	G	S	R	E	A	L	E	L	R	D	G	D	K	S	R	F	L	G	K	G	.	.	.	.	V	T	K	A	V	A	A	V	N	G	P	I	A	Q	A	L	I	G	K	D	A	K	D	Q	A	G	I	D	K	I	M	I
Query Conservation																																														.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	V	S	V	Q	L	I	L	E	N	G	A	V	A	V	G	D	C	A	A	V	Q	Y	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	G	R	D	P	L	F	L	A	E	H	F	I	P	F	L	N	D	H	I	K	P	L	L	E	G	R	D	V	D	A	F	L	P	N	A	R	F	F	D
Template Known Secondary structure										T	T	S											T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T																		T					T	T		B		S		S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.															.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	D	G	T	E	N	K	S	K	F	G	A	N	A	I	L	A	V	S	L	A	N	A	K	A	A	A	A	A	K	G	M	P	L	Y	E	H	I	A	E	L	N	G	T	P	G	K	Y	S	M	P	V	P	M	M	N	I	I	N	G	G	E	H	A	D	N	N	V	D	I	Q	E	F	M	I	Q	P	V	G
Query Conservation
Alig confidence												.	.																																			.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.																																			.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	L	R	I	D	G	N	L	L	H	.	.	T	A	V	R	Y	G	L	S	Q	A	L	L	D	A	T	A	L	A	S	G	R	L	K	T	E	V	V	C	D	E	W	Q	L	P	.	C	V	P	E	A	I	P	L	F	G	Q	S	G	D	D	R	Y	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						T	T					.	.																				T												T			.													T	T		T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure												.	.																																			.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.			.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	T	V	K	E	A	I	R	M	G	S	E	V	F	H	H	L	A	K	V	L	K	A	K	G	M	N	T	A	V	G	D	E	G	G	Y	A	P	N	L	G	S	N	A	E	A	L	A	V	I	A	E	A	V	K	A	A	G	Y	E	L	G	K	D	I	T	L	A	M	D	C	A	A	S	E	F	Y	K	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.																											.	.	.																																	.	.							.
Template Conservation		.	.	.	.	.	.	.	.	.	.																											.	.	.																																	.	.							.
Template Sequence		.	.	.	.	.	.	.	.	.	.	V	D	K	X	I	L	K	G	V	D	V	L	P	H	A	L	I	N	N	V	E	E	K	L	G	F	.	.	.	K	G	E	K	L	R	E	Y	V	R	W	L	S	D	R	I	L	S	L	R	S	S	P	R	Y	H	P	T	L	H	I	D	.	.	V	Y	G	T	I	G	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.							T	T		S					T	T										T	.	.	.	T	S																			S	S	T	T									.	.		T	T				.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																											.	.	.																																	.	.							.
Template SS confidence
												181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.				.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.				.	.	.	290	.	.	.	.	.	.	.					.	.	300	.	.	.	.	.	.	.						.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure																																	.	.	.												.	.	.	.											.	.	.	.	.
Query SS confidence																																	.	.	.												.	.	.	.											.	.	.	.	.
Query Sequence		G	K	Y	V	L	A	G	E	G	N	K	A	F	T	S	E	E	F	T	H	F	L	E	E	L	T	K	Q	Y	P	I	.	.	.	V	S	I	E	D	G	L	D	E	S	D	.	.	.	.	W	D	G	F	A	Y	Q	T	K	V	.	.	.	.	.	L	G	D	K	I	Q	L	V	G	D	D	L	F	V	T	N
Query Conservation																																	.	.	.												.	.	.	.											.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																		.						.	.	.												.	.	.	.											.	.	.	.	.								.	.	.
Template Conservation		.	.	.	.	.	.	.	.																		.																																														.	.	.
Template Sequence		.	.	.	.	.	.	.	.	L	I	F	D	X	D	P	V	R	C	A	E	Y	I	A	S	L	.	E	K	E	A	Q	G	L	P	L	Y	I	E	G	P	V	D	A	G	N	K	P	D	Q	I	R	X	L	T	A	I	T	K	E	L	T	R	L	G	S	G	V	K	I	V	A	.	.	.	D	E	W	C	N	T
Template Known Secondary structure		.	.	.	.	.	.	.	.			T	T	T												T	.	T	G	G	G	T	T	S											S	S																			T								.	.	.		T	T			S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																		.																																														.	.	.
Template SS confidence
										245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.				.	.	.	310	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.			.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		T	K	I	L	K	E	G	I	E	K	G	I	A	N	S	I	L	I	K	F	N	Q	I	G	S	L	T	E	T	L	A	A	I	K	M	A	K	D	A	G	Y	T	A	V	I	S	H	R	S	G	E	T	E	D	A	T	I	A	.	.	D	L	A	V	G	T	A	A	G	Q	I
Query Conservation																																																												.	.
Alig confidence																																																												.	.
Template Conservation
Template Sequence		Y	Q	D	I	V	D	F	T	D	A	G	S	C	H	X	V	Q	I	K	T	P	D	L	G	G	I	H	N	I	V	D	A	V	L	Y	C	N	K	H	G	X	E	A	Y	Q	G	G	T	C	N	E	T	E	I	S	A	R	T	C	V	H	V	A	L	A	A	R	P	X	R	X
Template Known Secondary structure											T	T			S						G	G	G	G	S	S	T													T	T									T	T	S																		S
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions