Job Description P0A6P9 Confidence 96.95% Date Wed Jan 25 15:20:15 GMT 2012 Rank 169 Aligned Residues 148 % Identity 19% Template c1djnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) Resolution 2.20 Å

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		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210										.	.	.	.	.	.	.	.	.	220							.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.
Query Sequence		K	E	A	I	R	M	G	S	E	V	F	H	H	L	A	K	V	L	K	A	K	G	M	N	T	A	V	G	D	E	G	.	.	.	.	.	.	.	.	.	G	Y	A	P	N	L	G	S	N	A	.	.	.	.	.	.	E	A	L	A	V	I	A	E	A	V	K	A	A	G	Y	E	L	G	K	D	I	T	L	A
Query Conservation																																	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.
Template Conservation
Template Sequence		L	S	D	I	A	Q	V	Q	Q	F	Y	V	D	A	A	K	R	S	R	D	A	G	F	D	I	V	Y	V	Y	G	A	H	S	Y	L	P	L	Q	F	L	N	P	Y	Y	N	K	R	T	D	K	Y	G	G	S	L	E	N	R	A	R	F	W	L	E	T	L	E	K	V	K	H	A	V	G	S	D	C	A	I	A
Template Known Secondary structure																						T	T		S								T	T									T	T	T					S	T	T	S	S	S																				T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.												290	.	.	.	.	.	.	.	.							.	300	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.
Query Sequence		M	D	C	A	A	S	E	F	Y	K	D	G	K	Y	V	L	A	G	E	G	N	K	A	F	T	S	E	E	F	T	H	F	L	E	E	L	T	K	Q	Y	P	I	V	S	I	.	.	.	.	.	.	.	.	.	.	.	E	D	G	L	D	E	S	D	W	.	.	.	.	.	.	D	G	F	A	Y	Q	T	K	V
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.																		.									.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.																		.
Template Sequence		T	R	F	G	V	D	T	V	Y	.	.	.	.	.	.	.	.	.	.	G	P	G	Q	I	E	A	E	V	D	G	Q	K	F	V	E	M	.	A	D	S	L	V	D	M	W	D	I	T	I	G	D	I	A	E	W	G	E	D	A	G	P	S	R	F	Y	Q	Q	G	H	T	I	P	W	V	K	L	V	K	Q	V
Template Known Secondary structure									S	S	.	.	.	.	.	.	.	.	.	.		T	T	S			T	T	T									.		T	T	T		S							S		S	T	T	G	G	G	T	S			T	T	T			T	T	T	T									T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.																		.
Template SS confidence
		221	.	.	.	.	.	.	.	.											230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	D	K	I	Q	L	V	G	D	D	L	F	V	T	N	T	K	I	L	K	E	G	I	E	K	G	I	A	N	S	I	L	I
Query Conservation
Alig confidence												.	.	.
Template Conservation												.	.	.
Template Sequence		S	K	K	P	V	L	G	V	G	R	.	.	.	Y	T	D	P	E	K	M	I	E	I	V	T	K	G	Y	A	D	I	I	G	C
Template Known Secondary structure			S	S						S		.	.	.													T	T	S		S	B
Template Predicted Secondary structure												.	.	.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.				300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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