Return to main results Retrieve Phyre Job Id

Job DescriptionP76169
Confidence6.07%DateThu Jan 5 12:20:02 GMT 2012
Rank12Aligned Residues53
% Identity23%Templatec2gfpA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli
Resolution3.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   51........60.........70.........80.........90.........100...
Predicted Secondary structure 











Query SS confidence 




















































Query Sequence  LHPAASGRVYAAYGGVYVCTALMWLRVVDGVKLTLYDWTGALIALCGMLIIVA
Query Conservation 


   











  



   


  

  
  

 
 
 
  


 
Alig confidence 




















































Template Conservation   
    
   
   
         
 
 

 


  
                
Template Sequence  VREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT
Template Known Secondary structure  STTTTTTS





Template Predicted Secondary structure 




Template SS confidence 




















































   40.........50.........60.........70.........80.........90..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions