Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	N	L	I	I	T	T	R	Q	S	P	V	R	L	L	V	D	Y	V	A	T	T	I	L	W	T	L	F	A	L	F	I	F	L	F	A	M	D	L	L	T	G	Y	Y	W	Q	S	E	A	R	S	R	L	Q	F	Y	F	L	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																																				?		?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	V	A	N	A	V	V	L	I	V	W	A	L	Y	N	K	L	R	F	Q	K	Q	Q	H	H	A	A	Y	Q	Y	T	P	Q	E	Y	A	E	S	L	A	I	P	D	E	L	Y	Q	Q	L	Q	K	S	H	R	M	S	V	H	F	T
Secondary structure
SS confidence
Disorder																						?	?	?	?	?	?	?	?	?	?	?										?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Sequence		S	Q	G	Q	I	K	M	V	V	S	E	K	A	L	V	R	A
Secondary structure
SS confidence
Disorder												?	?		?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1wi9 chain A Region: 69 - 128 Aligned: 53 Modelled: 60 Confidence: 72.8% Identity: 11% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: PCI domain (PINT motif) Phyre2 PDB 1od5 chain A domain 1 Region: 89 - 128 Aligned: 34 Modelled: 40 Confidence: 60.9% Identity: 18% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Germin/Seed storage 7S protein Phyre2 PDB 2kxx chain A Region: 111 - 134 Aligned: 24 Modelled: 24 Confidence: 52.7% Identity: 21% PDB header:protein binding Chain: A: PDB Molecule:small protein a; PDBTitle: nmr structure of escherichia coli bame, a lipoprotein component of the2 beta-barrel assembly machinery complex Phyre2 PDB 3f2h chain A Region: 86 - 125 Aligned: 39 Modelled: 40 Confidence: 52.7% Identity: 15% PDB header:lyase Chain: A: PDB Molecule:alkylmercury lyase; PDBTitle: crystal structure of the mercury-bound form of merb mutant2 c160s, the organomercurial lyase involved in a bacterial3 mercury resistance system Phyre2 PDB 1s6l chain A domain 1 Region: 88 - 125 Aligned: 37 Modelled: 38 Confidence: 42.0% Identity: 19% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: MerB N-terminal domain-like Phyre2 PDB 1y6u chain A Region: 89 - 113 Aligned: 25 Modelled: 25 Confidence: 35.7% Identity: 16% PDB header:dna binding protein Chain: A: PDB Molecule:excisionase from transposon tn916; PDBTitle: the structure of the excisionase (xis) protein from2 conjugative transposon tn916 provides insights into the3 regulation of heterobivalent tyrosine recombinases Phyre2 PDB 1j9i chain A Region: 90 - 133 Aligned: 44 Modelled: 44 Confidence: 32.3% Identity: 11% Fold: Putative DNA-binding domain Superfamily: Putative DNA-binding domain Family: Terminase gpNU1 subunit domain Phyre2 PDB 1l0o chain C Region: 91 - 112 Aligned: 22 Modelled: 22 Confidence: 32.1% Identity: 32% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factors Family: Sigma4 domain Phyre2 PDB 1l0o chain C Region: 91 - 112 Aligned: 22 Modelled: 22 Confidence: 32.1% Identity: 32% PDB header:protein binding Chain: C: PDB Molecule:sigma factor; PDBTitle: crystal structure of the bacillus stearothermophilus anti-2 sigma factor spoiiab with the sporulation sigma factor3 sigmaf Phyre2 PDB 2kfs chain A Region: 88 - 125 Aligned: 38 Modelled: 38 Confidence: 30.0% Identity: 18% PDB header:dna-binding protein Chain: A: PDB Molecule:conserved hypothetical regulatory protein; PDBTitle: nmr structure of rv2175c Phyre2 PDB 1fxz chain A domain 1 Region: 89 - 122 Aligned: 34 Modelled: 34 Confidence: 29.2% Identity: 12% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Germin/Seed storage 7S protein Phyre2 PDB 1rp3 chain A domain 1 Region: 91 - 111 Aligned: 21 Modelled: 21 Confidence: 28.8% Identity: 29% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Sigma3 and sigma4 domains of RNA polymerase sigma factors Family: Sigma3 domain Phyre2 PDB 1fxz chain A domain 2 Region: 88 - 113 Aligned: 26 Modelled: 26 Confidence: 26.8% Identity: 4% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Germin/Seed storage 7S protein Phyre2 PDB 3flj chain A Region: 112 - 129 Aligned: 18 Modelled: 18 Confidence: 25.0% Identity: 11% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein conserved in bacteria with a PDBTitle: crystal structure of uncharacterized protein conserved in bacteria2 with a cystatin-like fold (yp_168589.1) from silicibacter pomeroyi3 dss-3 at 2.00 a resolution Phyre2 PDB 1dgw chain A Region: 88 - 128 Aligned: 35 Modelled: 41 Confidence: 24.6% Identity: 14% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Germin/Seed storage 7S protein Phyre2 PDB 1t47 chain A domain 2 Region: 72 - 131 Aligned: 59 Modelled: 60 Confidence: 24.1% Identity: 8% Fold: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family: Extradiol dioxygenases Phyre2 PDB 2cw1 chain A Region: 96 - 126 Aligned: 31 Modelled: 31 Confidence: 23.7% Identity: 26% PDB header:de novo protein Chain: A: PDB Molecule:sn4m; PDBTitle: solution structure of the de novo-designed lambda cro fold2 protein Phyre2 PDB 1od5 chain A domain 2 Region: 89 - 113 Aligned: 25 Modelled: 25 Confidence: 23.7% Identity: 12% Fold: Double-stranded beta-helix Superfamily: RmlC-like cupins Family: Germin/Seed storage 7S protein Phyre2 PDB 1wdv chain A Region: 84 - 130 Aligned: 42 Modelled: 45 Confidence: 22.8% Identity: 17% Fold: YbaK/ProRS associated domain Superfamily: YbaK/ProRS associated domain Family: YbaK/ProRS associated domain Phyre2 PDB 1y0p chain A domain 3 Region: 70 - 108 Aligned: 39 Modelled: 39 Confidence: 22.4% Identity: 10% Fold: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Superfamily: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Family: Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Phyre2 1 d1wi9a_ 2 d1od5a1 3 c2kxxA_ 4 c3f2hA_ 5 d1s6la1 6 c1y6uA_ 7 d1j9ia_ 8 d1l0oc_ 9 c1l0oC_ 10 c2kfsA_ 11 d1fxza1 12 d1rp3a1 13 d1fxza2 14 c3fljA_ 15 d1dgwa_ 16 d1t47a2 17 c2cw1A_ 18 d1od5a2 19 d1wdva_ 20 d1y0pa3 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1wi9a_ 72.8 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PCI domain (PINT motif) 2 d1od5a1 60.9 18 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 3 c2kxxA_ 52.7 21 PDB header:protein binding Chain: A: PDB Molecule:small protein a; PDBTitle: nmr structure of escherichia coli bame, a lipoprotein component of the2 beta-barrel assembly machinery complex 4 c3f2hA_ 52.7 15 PDB header:lyase Chain: A: PDB Molecule:alkylmercury lyase; PDBTitle: crystal structure of the mercury-bound form of merb mutant2 c160s, the organomercurial lyase involved in a bacterial3 mercury resistance system 5 d1s6la1 42.0 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MerB N-terminal domain-like 6 c1y6uA_ 35.7 16 PDB header:dna binding protein Chain: A: PDB Molecule:excisionase from transposon tn916; PDBTitle: the structure of the excisionase (xis) protein from2 conjugative transposon tn916 provides insights into the3 regulation of heterobivalent tyrosine recombinases 7 d1j9ia_ 32.3 11 Fold:Putative DNA-binding domain Superfamily:Putative DNA-binding domain Family:Terminase gpNU1 subunit domain 8 d1l0oc_ 32.1 32 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 9 c1l0oC_ 32.1 32 PDB header:protein binding Chain: C: PDB Molecule:sigma factor; PDBTitle: crystal structure of the bacillus stearothermophilus anti-2 sigma factor spoiiab with the sporulation sigma factor3 sigmaf 10 c2kfsA_ 30.0 18 PDB header:dna-binding protein Chain: A: PDB Molecule:conserved hypothetical regulatory protein; PDBTitle: nmr structure of rv2175c 11 d1fxza1 29.2 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 12 d1rp3a1 28.8 29 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma3 domain 13 d1fxza2 26.8 4 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 14 c3fljA_ 25.0 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein conserved in bacteria with a PDBTitle: crystal structure of uncharacterized protein conserved in bacteria2 with a cystatin-like fold (yp_168589.1) from silicibacter pomeroyi3 dss-3 at 2.00 a resolution 15 d1dgwa_ 24.6 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 16 d1t47a2 24.1 8 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 17 c2cw1A_ 23.7 26 PDB header:de novo protein Chain: A: PDB Molecule:sn4m; PDBTitle: solution structure of the de novo-designed lambda cro fold2 protein 18 d1od5a2 23.7 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 19 d1wdva_ 22.8 17 Fold:YbaK/ProRS associated domain Superfamily:YbaK/ProRS associated domain Family:YbaK/ProRS associated domain 20 d1y0pa3 22.4 10 Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21 d1ku2a1 not modelled 21.2 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma3 domain 22 d1hlva1 not modelled 20.9 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Centromere-binding 23 d3e11a1 not modelled 20.8 33 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:TTHA0227-like 24 d1bw6a_ not modelled 20.6 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Centromere-binding 25 d2phla1 not modelled 19.5 15 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 26 d1qo8a3 not modelled 19.5 11 Fold:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Superfamily:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Family:Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 27 c3t72o_ not modelled 19.4 21 PDB header:transcription/dna Chain: O: PDB Molecule:pho box dna (strand 1); PDBTitle: phob(e)-sigma70(4)-(rnap-betha-flap-tip-helix)-dna transcription2 activation sub-complex 28 d1uika1 not modelled 18.2 11 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 29 d1uika2 not modelled 17.4 21 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 30 c3r1fO_ not modelled 17.4 12 PDB header:transcription Chain: O: PDB Molecule:esx-1 secretion-associated regulator espr; PDBTitle: crystal structure of a key regulator of virulence in mycobacterium2 tuberculosis 31 d1rzhh2 not modelled 17.2 17 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 32 d3orca_ not modelled 16.7 9 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 33 c1hlvA_ not modelled 16.5 19 PDB header:dna binding protein/dna Chain: A: PDB Molecule:major centromere autoantigen b; PDBTitle: crystal structure of cenp-b(1-129) complexed with the cenp-2 b box dna 34 d1eysh2 not modelled 16.1 13 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 35 d2oa4a1 not modelled 15.8 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:TrpR-like Family:SPO1678-like 36 c2jo1A_ not modelled 15.6 17 PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles 37 d1l9bh2 not modelled 15.3 17 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 38 d2rcrh2 not modelled 15.0 20 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 39 c2e9qA_ not modelled 14.9 19 PDB header:plant protein Chain: A: PDB Molecule:11s globulin subunit beta; PDBTitle: recombinant pro-11s globulin of pumpkin 40 d2jn6a1 not modelled 14.7 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Cgl2762-like 41 c2d5fB_ not modelled 14.6 19 PDB header:plant protein Chain: B: PDB Molecule:glycinin a3b4 subunit; PDBTitle: crystal structure of recombinant soybean proglycinin a3b4 subunit, its2 comparison with mature glycinin a3b4 subunit, responsible for hexamer3 assembly 42 c2jrtA_ not modelled 14.5 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: nmr solution structure of the protein coded by gene2 rhos4_12090 of rhodobacter sphaeroides. northeast3 structural genomics target rhr5 43 c3f8xD_ not modelled 14.4 24 PDB header:isomerase Chain: D: PDB Molecule:putative delta-5-3-ketosteroid isomerase; PDBTitle: crystal structure of a putative delta-5-3-ketosteroid isomerase2 (eca2236) from pectobacterium atrosepticum scri1043 at 1.55 a3 resolution 44 d2et1a1 not modelled 14.2 8 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 45 c1dgrW_ not modelled 14.1 15 PDB header:plant protein Chain: W: PDB Molecule:canavalin; PDBTitle: refined crystal structure of canavalin from jack bean 46 d3dxoa1 not modelled 13.6 28 Fold:Cystatin-like Superfamily:NTF2-like Family:Atu0744-like 47 d2phcb1 not modelled 13.5 10 Fold:Cyclophilin-like Superfamily:Cyclophilin-like Family:PH0987 C-terminal domain-like 48 d1bl0a1 not modelled 13.4 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:AraC type transcriptional activator 49 d2p7vb1 not modelled 12.5 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 50 c2rn7A_ not modelled 12.5 14 PDB header:unknown function Chain: A: PDB Molecule:is629 orfa; PDBTitle: nmr solution structure of tnpe protein from shigella2 flexneri. northeast structural genomics target sfr125 51 d1sqda2 not modelled 12.4 13 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 52 c2elhA_ not modelled 11.5 13 PDB header:dna binding protein Chain: A: PDB Molecule:cg11849-pa; PDBTitle: solution structure of the cenp-b n-terminal dna-binding2 domain of fruit fly distal antenna cg11849-pa 53 d1ufma_ not modelled 11.5 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PCI domain (PINT motif) 54 d2hq2a1 not modelled 11.2 19 Fold:Heme iron utilization protein-like Superfamily:Heme iron utilization protein-like Family:HemS/ChuS-like 55 c2k9lA_ not modelled 11.0 13 PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma factor rpon; PDBTitle: structure of the core binding domain of sigma54 56 c2htfA_ not modelled 11.0 20 PDB header:transferase Chain: A: PDB Molecule:dna polymerase mu; PDBTitle: the solution structure of the brct domain from human2 polymerase reveals homology with the tdt brct domain 57 d1t1da_ not modelled 10.9 0 Fold:POZ domain Superfamily:POZ domain Family:Tetramerization domain of potassium channels 58 c2zp2B_ not modelled 10.8 14 PDB header:transferase inhibitor Chain: B: PDB Molecule:kinase a inhibitor; PDBTitle: c-terminal domain of kipi from bacillus subtilis 59 d1b4ua_ not modelled 10.1 14 Fold:LigA subunit of an aromatic-ring-opening dioxygenase LigAB Superfamily:LigA subunit of an aromatic-ring-opening dioxygenase LigAB Family:LigA subunit of an aromatic-ring-opening dioxygenase LigAB 60 c3lsgD_ not modelled 10.1 18 PDB header:transcription regulator Chain: D: PDB Molecule:two-component response regulator yesn; PDBTitle: the crystal structure of the c-terminal domain of the two-2 component response regulator yesn from fusobacterium3 nucleatum subsp. nucleatum atcc 25586 61 c2lfcA_ not modelled 10.1 19 PDB header:oxidoreductase Chain: A: PDB Molecule:fumarate reductase, flavoprotein subunit; PDBTitle: solution nmr structure of fumarate reductase flavoprotein subunit from2 lactobacillus plantarum, northeast structural genomics consortium3 target lpr145j 62 c1y66D_ not modelled 9.8 30 PDB header:de novo protein Chain: D: PDB Molecule:engrailed homeodomain; PDBTitle: dioxane contributes to the altered conformation and2 oligomerization state of a designed engrailed homeodomain3 variant 63 d2ofya1 not modelled 9.8 14 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 64 c3msoA_ not modelled 9.8 19 PDB header:isomerase Chain: A: PDB Molecule:steroid delta-isomerase; PDBTitle: crystal structure of a steroid delta-isomerase (np_250810.1) from2 pseudomonas aeruginosa at 2.57 a resolution 65 d2p6ra2 not modelled 9.6 9 Fold:Sec63 N-terminal domain-like Superfamily:Sec63 N-terminal domain-like Family:Achaeal helicase C-terminal domain 66 c2v9vA_ not modelled 9.5 11 PDB header:transcription Chain: A: PDB Molecule:selenocysteine-specific elongation factor; PDBTitle: crystal structure of moorella thermoacetica selb(377-511) 67 c2phcB_ not modelled 9.3 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein ph0987; PDBTitle: crystal structure of conserved uncharacterized protein ph0987 from2 pyrococcus horikoshii 68 c3bd1B_ not modelled 9.2 16 PDB header:transcription Chain: B: PDB Molecule:cro protein; PDBTitle: structure of the cro protein from putative prophage element xfaso 1 in2 xylella fastidiosa strain ann-1 69 c1tfzA_ not modelled 9.2 11 PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxyphenylpyruvate dioxygenase; PDBTitle: structural basis for herbicidal inhibitor selectivity revealed by2 comparison of crystal structures of plant and mammalian 4-3 hydroxyphenylpyruvate dioxygenases 70 c2k9sA_ not modelled 9.2 9 PDB header:transcription Chain: A: PDB Molecule:arabinose operon regulatory protein; PDBTitle: solution structure of dna binding domain of e. coli arac 71 d1ku3a_ not modelled 9.1 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 72 d1sp9a_ not modelled 8.7 11 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases 73 c1cauB_ not modelled 8.7 15 PDB header:seed storage protein Chain: B: PDB Molecule:canavalin; PDBTitle: determination of three crystal structures of canavalin by molecular2 replacement 74 d1p7ia_ not modelled 8.5 7 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 75 c1k6nH_ not modelled 8.5 17 PDB header:photosynthesis Chain: H: PDB Molecule:photosynthetic reaction center h subunit; PDBTitle: e(l212)a,d(l213)a double mutant structure of photosynthetic reaction2 center from rhodobacter sphaeroides 76 c2kpjA_ not modelled 8.2 19 PDB header:transcription regulator Chain: A: PDB Molecule:sos-response transcriptional repressor, lexa; PDBTitle: solution structure of protein sos-response transcriptional2 repressor, lexa from eubacterium rectale. northeast3 structural genomics consortium target err9a 77 d1pbja3 not modelled 8.1 20 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 78 d1xd7a_ not modelled 8.1 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator Rrf2 79 c1sp8A_ not modelled 8.1 11 PDB header:oxidoreductase Chain: A: PDB Molecule:4-hydroxyphenylpyruvate dioxygenase; PDBTitle: 4-hydroxyphenylpyruvate dioxygenase 80 c3t76A_ not modelled 8.0 17 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator vanug; PDBTitle: crystal structure of transcriptional regulator vanug, form ii 81 d1yava3 not modelled 7.8 3 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 82 d2d30a1 not modelled 7.7 13 Fold:Cytidine deaminase-like Superfamily:Cytidine deaminase-like Family:Cytidine deaminase 83 d1wj6a_ not modelled 7.7 8 Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain 84 d1d5ya1 not modelled 7.7 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:AraC type transcriptional activator 85 c3a03A_ not modelled 7.7 11 PDB header:gene regulation Chain: A: PDB Molecule:t-cell leukemia homeobox protein 2; PDBTitle: crystal structure of hox11l1 homeodomain 86 c1fxzC_ not modelled 7.6 3 PDB header:plant protein Chain: C: PDB Molecule:glycinin g1; PDBTitle: crystal structure of soybean proglycinin a1ab1b homotrimer 87 d1j58a_ not modelled 7.6 12 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 88 d1u5tb1 not modelled 7.5 44 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Vacuolar sorting protein domain 89 c3bdnB_ not modelled 7.4 7 PDB header:transcription/dna Chain: B: PDB Molecule:lambda repressor; PDBTitle: crystal structure of the lambda repressor 90 d1pn0a3 not modelled 7.3 33 Fold:FAD-linked reductases, C-terminal domain Superfamily:FAD-linked reductases, C-terminal domain Family:PHBH-like 91 d1ttya_ not modelled 7.3 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 92 c2ph0A_ not modelled 7.2 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the q6d2t7_erwct protein from erwinia2 carotovora. nesg target ewr41. 93 c2f9jP_ not modelled 7.2 7 PDB header:rna binding protein Chain: P: PDB Molecule:splicing factor 3b subunit 1; PDBTitle: 3.0 angstrom resolution structure of a y22m mutant of the spliceosomal2 protein p14 bound to a region of sf3b155 94 d1mh3a1 not modelled 7.2 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 95 c1eysH_ not modelled 7.0 13 PDB header:electron transport Chain: H: PDB Molecule:photosynthetic reaction center; PDBTitle: crystal structure of photosynthetic reaction center from a2 thermophilic bacterium, thermochromatium tepidum 96 c2fjrB_ not modelled 7.0 9 PDB header:transcription regulator Chain: B: PDB Molecule:repressor protein ci; PDBTitle: crystal structure of bacteriophage 186 97 d2yzia1 not modelled 6.9 14 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 98 c2r5vA_ not modelled 6.9 8 PDB header:oxidoreductase Chain: A: PDB Molecule:pcza361.1; PDBTitle: hydroxymandelate synthase crystal structure 99 c2vqaC_ not modelled 6.9 14 PDB header:metal-binding protein Chain: C: PDB Molecule:sll1358 protein; PDBTitle: protein-folding location can regulate mn versus cu- or zn-2 binding. crystal structure of mnca.

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0