Job Description P75931 Confidence 100.00% Date Thu Jan 5 12:16:06 GMT 2012 Rank 30 Aligned Residues 301 % Identity 17% Template c2q4eB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:probable oxidoreductase at4g09670; PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at4g09670 Resolution 2.49 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.					.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.										.	.
Query SS confidence																																																				.	.	.	.										.	.
Query Sequence		K	L	R	I	G	V	V	G	L	G	G	I	A	Q	K	A	W	L	P	V	L	A	A	A	S	D	W	T	L	Q	G	A	W	S	P	T	R	A	K	A	L	P	I	C	E	S	W	R	I	P	.	.	.	.	Y	A	D	S	L	S	S	L	A	.	.	A	S	C	D	A	V	F	V	H	S	S	T	A	S	H
Query Conservation																																																				.	.	.	.										.	.
Alig confidence																.																																				.	.	.	.										.	.
Template Conservation																.
Template Sequence		Q	I	R	I	G	V	X	G	C	A	D	I	A	R	.	K	V	S	R	A	I	H	L	A	P	N	A	T	I	S	G	V	A	S	R	S	L	E	K	A	K	A	F	A	T	A	N	N	Y	P	E	S	T	K	I	H	G	S	Y	E	S	L	L	E	D	P	E	I	D	A	L	Y	V	P	L	P	T	S	L	H
Template Known Secondary structure									S			T				.							T	T		S	S									S												T	T			T	T	S				S							T		T	T										G	G	G
Template Predicted Secondary structure																.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.												.	.	.	.	.	.	.
Query SS confidence																																																															.												.	.	.	.	.	.	.
Query Sequence		F	D	V	V	S	T	L	L	N	A	G	V	H	V	C	V	D	K	P	L	A	E	N	L	R	D	A	E	R	L	V	E	L	A	A	R	K	K	L	T	L	M	V	G	F	N	R	R	F	A	P	L	Y	G	E	L	K	T	Q	L	A	.	T	A	A	S	L	R	M	D	K	H	R	.	.	.	.	.	.	.
Query Conservation																																																															.												.	.	.	.	.	.	.
Alig confidence																																																															.												.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	E	W	A	I	K	A	A	E	K	G	K	H	I	L	L	E	K	P	V	A	X	N	V	T	E	F	D	K	I	V	D	A	C	E	A	N	G	V	Q	I	X	D	G	T	X	W	V	H	N	P	R	T	A	L	L	K	E	F	L	S	D	S	E	R	F	G	Q	L	K	T	V	Q	S	C	F	S	F	A	G
Template Known Secondary structure											T	T							S	S			S	S														T	T								G	G	G	T	S													T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
										149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190						.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																											.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																																											.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	S	N	S	V	G	P	H	D	L	Y	F	T	L	L	D	D	Y	L	H	V	V	D	T	A	L	W	L	S	G	G	K	A	S	L	D	G	G	T	L	L	T	N	.	.	.	.	.	D	A	G	E	M	L	F	A	E	H	H	F	S	A	G	P	L	Q	I	T	T	C	M	H	R
Query Conservation		.	.	.	.	.	.	.	.																																											.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																											.	.	.	.	.
Template Conservation
Template Sequence		D	E	D	F	L	K	N	D	I	R	V	K	P	G	L	D	G	L	G	A	L	G	D	A	G	W	Y	A	I	R	A	T	L	L	A	N	N	F	E	L	P	K	T	V	T	A	F	P	G	A	V	L	N	E	A	G	V	I	L	S	C	G	A	S	L	S	W	E	D	G	R	T	A	T	I	Y	C	S	F	L
Template Known Secondary structure										T	T	T	S	S	S	T	T	T	T	T					T												T	T	T				S						S						T	T	S												S	S	S									S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.															.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	A	G	S	Q	R	E	T	V	Q	A	V	T	D	G	A	L	I	D	I	T	D	M	R	E	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	E	R	G	Q	G	V	V	H	K	P	I	P	G	W	Q	S	T	L	E	Q	R	G	F	V	G	C	A	R	H	F	I	E	C	V	Q	N	Q	T
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.
Template Sequence		A	N	L	T	.	.	X	E	I	T	A	I	G	T	K	G	T	L	R	V	H	D	F	I	I	P	Y	K	E	T	E	A	S	F	T	T	S	T	K	A	W	F	N	D	L	V	T	A	W	V	S	P	P	S	E	H	T	V	K	T	E	L	P	Q	E	A	C	X	V	R	E	F	A	I	K	N	N	G	A	K
Template Known Secondary structure						.	.								S	S						S		S	S	S		S		T	T									S			B		T	T	S	S	S	B	S	S										S	S													T	T	T
Template Predicted Secondary structure						.	.
Template SS confidence
		245	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	Q	T	A	G	E	Q	A	V	L	A	Q	R	I	V	D	K	I	W	R	D	A	M	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	D	G	Y	W	P	S	I	S	R	K	T	Q	L	V	V	D	A	V	K	E	S	V	D	K
Template Known Secondary structure				S																					T	T
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions