Job Description P60757 Confidence 98.00% Date Thu Jan 5 12:07:08 GMT 2012 Rank 12 Aligned Residues 191 % Identity 18% Template c3uifA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sulfonate abc transporter, periplasmic sulfonate-binding PDBTitle: crystal structure of putative sulfonate abc transporter, periplasmic2 sulfonate-binding protein ssua from methylobacillus flagellatus kt Resolution 2.60 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.																		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.					.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.
Query Sequence		M	T	D	N	T	R	L	R	I	A	M	Q	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	R	L	S	D	D	S	R	E	L	L	A	R	C	G	I	K	I	N	L	H	T	Q	R	L	I	A	M	A	E	N	M	P	I	D	I	L	R	V	.	.	.	.	R	D	D	D	I	P
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Template Conservation																																							.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	E	D	L	K	V	V	R	I	A	S	V	A	T	N	V	G	G	K	T	V	Y	A	G	S	A	S	L	V	V	N	G	A	F	P	E	E	.	.	.	.	L	R	K	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	K	V	E	W	V	P	A	A	X	A	S	V	G	P	V	I	N
Template Known Secondary structure																		T	T						T								S	S					.	.	.	.				T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T
Template Predicted Secondary structure																																							.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60					.	.	.	.	.																	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.				.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.					.	130	.	.
Predicted Secondary structure																					.	.	.																																																			.	.	.	.
Query SS confidence																					.	.	.																																																			.	.	.	.
Query Sequence		G	L	V	M	D	G	V	V	D	L	G	I	I	G	E	N	V	L	E	.	.	.	E	E	L	L	N	R	R	A	Q	G	E	D	P	R	Y	F	T	L	R	R	L	D	F	G	G	C	R	L	S	L	A	T	P	V	D	E	A	W	D	G	P	L	S	L	N	G	K	R	I	A	.	.	.	.	T	S	Y	P
Query Conservation																					.	.	.																																																			.	.	.	.
Alig confidence																					.	.	.						.	.	.	.	.	.	.	.	.	.																																				.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.
Template Sequence		E	G	F	A	S	G	K	I	D	F	G	I	Y	G	D	L	P	P	I	I	L	N	A	S	K	P	T	.	.	.	.	.	.	.	.	.	.	V	Q	L	V	A	P	W	G	T	T	S	N	S	Y	L	V	V	P	K	N	S	T	A	K	S	I	K	D	L	K	G	K	K	I	A	L	H	R	G	R	P	W	E
Template Known Secondary structure						T	T									S										S			.	.	.	.	.	.	.	.	.	.																			T	T					S	G	G	G	G	T	T	S						T	T	S	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110											.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.				.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.							.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure														.	.	.											.																																			.	.	.	.	.	.
Query SS confidence														.	.	.											.																																			.	.	.	.	.	.
Query Sequence		H	L	L	K	R	Y	L	D	Q	K	G	I	.	.	.	S	F	K	S	C	L	L	N	G	S	.	V	E	V	A	P	R	A	G	L	A	D	A	I	C	D	L	V	S	T	G	A	T	L	E	A	N	G	L	R	E	V	E	V	I	.	.	.	.	.	.	Y	R	S	K	A	C	L	I	Q	R	D	G	E	M
Query Conservation														.	.	.											.																																			.	.	.	.	.	.
Alig confidence														.	.	.											.																																			.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	F	S	N	L	L	Q	S	E	G	L	T	F	K	D	F	K	I	V	N	V	N	P	Q	V	G	A	A	A	L	A	S	G	T	V	D	G	F	F	S	L	F	D	S	Y	I	L	E	D	R	G	V	G	K	I	I	W	S	T	K	T	A	P	V	D	W	K	L	X	G	G	V	W	A	R	N	D	F	V
Template Known Secondary structure											T	T			G	G	G	S																	T	S	S	S					S	T	T							T	T	S							G	G	G	S		G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	E	S	K	Q	Q	L	I	D	K	L	L	T	R	I	Q	G	V	I	Q
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		K	.	Q	N	P	E	I	T	Q	A	I	V	T	A	Y	L	K	S	V	H
Template Known Secondary structure			.
Template Predicted Secondary structure			.
Template SS confidence
		234		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions