Job Description P60757 Confidence 94.39% Date Thu Jan 5 12:07:08 GMT 2012 Rank 30 Aligned Residues 128 % Identity 14% Template c3tmgA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter, PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.						.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.
Query SS confidence																				.	.	.	.	.
Query Sequence		T	R	L	R	I	A	M	Q	K	S	G	R	L	S	D	D	S	R	.	.	.	.	.	E	L	L	A	R	C	G	I	K	I	N	L	H	T	Q	R	L	I	A	M	A	E	N	M	P	I	D	I	L	R	V	R	D	D	D	I	P	G	L	V	M	D	G	V	V	D	L	G	I	I	G	E	N	V	L	E	E
Query Conservation																				.	.	.	.	.
Alig confidence										.	.									.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Template Conservation										.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Template Sequence		K	S	V	K	I	G	Y	V	.	.	N	W	G	G	E	T	A	A	T	N	V	L	K	V	V	F	E	K	M	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	E	I	F	S	V	T	T	S	I	M	Y	Q	Y	L	A	S	G	K	I	D	G	T	V	S	S	W	.	.	.	V	P
Template Known Secondary structure										.	.																			T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		T	T	S	S	S							.	.	.		T
Template Predicted Secondary structure										.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.																	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.				.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.								.	.	.	.	.	.					.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.							.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.							.	.	.	.
Query Sequence		E	L	L	N	R	R	A	Q	G	E	D	P	R	Y	F	T	L	R	R	L	D	F	G	G	C	R	L	S	L	A	T	P	V	D	E	A	W	D	G	P	L	S	L	.	.	.	.	.	.	.	N	G	K	R	I	A	.	.	.	.	T	S	Y	P	H	L	L	K	R	Y	L	D	Q	K	G	I	S	F	K	S
Query Conservation																																													.	.	.	.	.	.	.							.	.	.	.
Alig confidence																											.																		.	.	.	.	.	.	.							.	.	.	.
Template Conservation																											.
Template Sequence		T	A	D	K	F	Y	Y	E	K	L	K	T	K	F	V	D	L	G	A	N	Y	E	G	T	I	.	Q	G	F	V	V	P	S	Y	V	P	I	S	S	I	S	E	L	K	G	K	G	D	K	F	K	N	K	M	I	G	I	D	A	G	A	G	T	Q	I	V	T	E	Q	A	L	N	Y	Y	G	L	S	K	E	Y
Template Known Secondary structure		T	T	T								G	G	G													.							T	T	S				B	G	G	G	G	T	T		G	G	G	G	T	T						S	T	T														T	T		T	T	T	S
Template Predicted Secondary structure																											.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		149	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	L	L	N	G	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	L	V	P	S	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions