Job Description P60757 Confidence 91.17% Date Thu Jan 5 12:07:08 GMT 2012 Rank 32 Aligned Residues 108 % Identity 9% Template c3l6gA_ PDB info PDB header:glycine betaine-binding protein Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation Resolution 1.90 Å

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		4	.	.	.	.	.	10				.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure									.	.	.
Query SS confidence									.	.	.
Query Sequence		N	T	R	L	R	I	A	.	.	.	M	Q	K	S	G	R	L	S	D	D	S	R	E	L	L	A	R	C	G	I	K	I	N	L	H	T	Q	R	L	I	A	M	A	E	N	M	P	I	D	I	L	R	V	R	D	D	D	I	P	G	L	V	M	D	G	V	V	D	L	G	I	I	G	E	N	V	L	E	E	E
Query Conservation									.	.	.
Alig confidence									.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.
Template Sequence		D	K	K	V	D	L	V	Y	M	N	W	D	S	E	V	A	S	I	N	V	L	T	Q	A	M	K	E	H	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	D	V	K	T	T	A	L	D	N	A	V	A	W	Q	T	V	A	N	G	Q	A	D	G	M	V	S	A	W	L	.	.	.	.	P
Template Known Secondary structure											S																		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			T	T	S	S	S								.	.	.	.	T
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.																	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.					.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	N	R	R	A	Q	G	E	D	P	R	Y	F	T	L	R	R	L	D	F	G	G	C	R	L	S	L	A	T	P	V	D	E	A	W	D	G	P	L	S	L	N	G	K	R	I	A	T	S	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	T	H	K	T	Q	W	Q	K	Y	G	K	S	V	D	L	L	G	P	N	L	K	G	A	K	V	G	F	V	V	P	S	Y	M	N	V	N	S	I	E	D	L	T	N	Q	A	N	K	T	I	T
Template Known Secondary structure		T	T	T								G	G	G																			T	T	S				B	G	G	G		S	S	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions