Job Description P60757 Confidence 37.94% Date Thu Jan 5 12:07:08 GMT 2012 Rank 77 Aligned Residues 114 % Identity 18% Template c3k2dA_ PDB info PDB header:immune system Chain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component; PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus Resolution 2.60 Å

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		45	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		N	M	P	I	D	I	L	R	V	R	D	.	D	D	I	P	G	L	V	M	D	G	V	V	D	L	G	I	I	G	E	N	V	L	E	E	E	L	L	N	R	R	A	Q	G	E	D	P	R	Y	F	T	L	R	R	L	D	F	G	G	C	R	L	S	L	A	T	P	V	D	E	A	W	D	G	P	L	S	L	N
Query Conservation													.
Alig confidence													.																													.	.	.	.	.	.																					.	.	.
Template Conservation																																										.	.	.	.	.	.																					.	.	.
Template Sequence		G	L	D	V	E	L	V	T	F	T	D	Y	V	T	P	N	A	A	L	D	D	G	S	I	D	M	N	A	F	Q	H	K	P	Y	L	D	R	Q	V	E	.	.	.	.	.	.	D	R	D	Y	K	L	T	I	A	G	N	T	F	V	Y	P	I	A	G	Y	.	.	.	S	K	Q	V	K	S	V	A	A	L	A
Template Known Secondary structure											S		T	T	S								T	S		S																.	.	.	.	.	.																					.	.	.		S	S		S		S	T	T
Template Predicted Secondary structure																																										.	.	.	.	.	.																					.	.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.							.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.	.
			124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.					140	.	.	.	.																						.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	G	K	R	I	A	T	S	Y	P	H	L	L	K	R	Y	L	.	.	.	.	D	Q	K	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	F	K	S	C	L	L	N	G	S	V	E	V	A	P	R	A	G	L	A	D	A	I	C
Query Conservation		.																	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																	.	.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.
Template Conservation																																																							.
Template Sequence		D	G	V	R	I	A	V	P	N	D	P	T	N	L	G	R	S	L	L	L	L	E	Q	Q	G	L	I	K	L	R	P	E	V	G	L	L	A	T	V	R	D	I	V	E	N	P	K	N	I	T	I	M	E	.	L	D	A	A	Q	L	P	R	S	L	D	D	V	A	L	S	I
Template Known Secondary structure		T	T								S														T	T	S					T	T			S	S			G	G	G					T	T							.			G	G	G					T	T	T	S	S
Template Predicted Secondary structure																																																							.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions