Job Description P60757 Confidence 87.53% Date Thu Jan 5 12:07:08 GMT 2012 Rank 39 Aligned Residues 138 % Identity 14% Template c3ir1F_ PDB info PDB header:protein binding Chain: F: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of lipoprotein gna1946 from neisseria2 meningitidis Resolution 2.15 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.					.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure															.	.	.	.
Query SS confidence															.	.	.	.
Query Sequence		R	L	R	I	A	M	Q	K	S	G	R	L	S	.	.	.	.	D	D	S	R	E	L	L	A	R	C	G	I	K	I	N	L	H	T	Q	R	L	I	A	M	A	E	N	M	P	I	D	I	L	R	V	R	D	D	D	I	P	G	L	V	M	D	G	V	V	D	L	G	I	I	G	E	N	V	L	E	E	E	L
Query Conservation															.	.	.	.
Alig confidence									.						.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	I	V	F	G	T	T	.	V	G	D	F	G	D	M	V	K	E	Q	I	Q	P	E	L	E	K	K	G	Y	T	V	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	F	T	D	Y	V	R	P	N	L	A	L	A	E	G	E	L	D	I	N	V	F	Q	H	K	P	Y	L	D	D	F
Template Known Secondary structure									.	S	S									T							T	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S	S	S									T	S		S
Template Predicted Secondary structure									.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		44	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.																.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	R	R	A	Q	G	E	D	P	R	Y	F	T	L	R	R	L	D	F	G	G	C	R	L	S	L	A	T	P	V	D	E	A	W	D	G	P	L	S	L	N	G	K	R	I	A	T	S	Y	P	.	.	.	.	H	L	L	K	R	Y	L	D	Q	K	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																					.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.																																	.	.										.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.																																	.	.
Template Sequence		K	K	.	.	.	.	.	.	E	H	N	L	D	I	T	E	V	F	Q	V	P	T	A	P	L	G	L	Y	P	G	K	L	K	S	L	E	E	V	K	D	.	.	G	S	T	V	S	A	P	N	D	P	S	N	F	A	R	V	L	V	M	L	D	E	L	G	W	I	K	L	K	D	G	I	N	P	L	T	A	S
Template Known Secondary structure				.	.	.	.	.	.														B								S	S	S		S	T	T	S			T	.	.	T								S														T	T	S	S				T	T	S		G	G	G
Template Predicted Secondary structure				.	.	.	.	.	.																																	.	.
Template SS confidence
		108	.							110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.			.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
											145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	S	F	K	S	C	L	L	N	G	S	V	E	V	A	P	R	A	G	L	A	D	A	I	C
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.												.
Template Conservation																						.
Template Sequence		K	A	D	I	A	E	N	L	K	N	I	K	I	V	E	L	E	A	A	Q	.	L	P	R	S	R	A	D	V	D	F	A	V
Template Known Secondary structure		G	G	G					T	T									G	G	G	.					G	G	G	S	S
Template Predicted Secondary structure																						.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.	210	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions