Job Description P60757 Confidence 88.88% Date Thu Jan 5 12:07:08 GMT 2012 Rank 35 Aligned Residues 163 % Identity 13% Template c2zzxD_ PDB info PDB header:transport protein Chain: D: PDB Molecule:abc transporter, solute-binding protein; PDBTitle: crystal structure of a periplasmic substrate binding protein in2 complex with lactate Resolution 1.75 Å

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		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.																														.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	V	R	D	D	D	I	P	G	L	V	M	D	G	V	V	D	L	G	I	I	G	E	N	V	L	E	E	E	L	L	N	R	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	G	E	D	P	R	Y	F	T	L	R	R	L	D	F	G
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	G	T	F	D	M	F	D	A	V	K	T	G	V	L	D	G	M	N	P	F	T	L	Y	W	A	G	R	M	P	V	T	A	F	L	S	S	Y	A	L	G	L	D	R	P	D	Q	W	E	T	W	F	Y	S	L	G	G	L	D	I	A	R	R	A	F	A	E	Q	G	L	F	Y	V	G	P	V	Q	H	D
Template Known Secondary structure		S	S		G	G	G								T	S	S	S					B	G	G	G	G	T	T	T		G	G	G	G	G	S	S			T	T	S			S										T	S	S											T	T	T
Template Predicted Secondary structure
Template SS confidence
		3077	.	.	3080	.	.	.	.	.	.	.	.	.	3090	.	.	.	.	.	.	.	.	.	3100	.	.	.	.	.	.	.	.	.	3110	.	.	.	.	.	.	.	.	.	3120	.	.	.	.	.	.	.	.	.	3130	.	.	.	.	.	.	.	.	.	3140	.	.	.	.	.	.	.	.	.	3150	.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.		.	.	180	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		G	C	R	L	S	L	A	T	P	V	D	E	A	W	D	G	P	L	S	L	N	G	K	R	I	A	T	S	Y	P	H	L	L	K	R	Y	L	D	Q	K	G	I	S	F	K	S	C	L	L	N	G	S	V	E	V	A	P	R	A	G	L	A	D	A	I	C	D	L	V	S	T	G	A	T	L	.	E	A	N	G
Query Conservation																																																																													.
Alig confidence								.	.	.	.																		.																											.												.	.	.							.
Template Conservation								.	.	.	.																		.																											.												.	.	.
Template Sequence		L	N	I	I	H	S	.	.	.	.	K	K	P	I	R	R	F	E	D	F	K	G	V	K	L	R	V	.	P	G	G	M	I	A	E	V	F	A	A	A	G	A	S	T	V	L	L	P	G	G	E	V	Y	P	.	A	L	E	R	G	V	I	D	A	A	D	.	.	.	F	V	G	P	A	V	N	Y	N	L	G
Template Known Secondary structure								.	.	.	.	S	S				S	G	G	G	G	T	T						.		S										T	T								G	G	G				.				T	T	S		S				.	.	.		S								T	T
Template Predicted Secondary structure								.	.	.	.																		.																											.												.	.	.
Template SS confidence
		3157	.	.	3160	.	.					.	.	.	.	.	.	.	3170	.	.	.	.	.	.	.	.	.		3180	.	.	.	.	.	.	.	.	.	3190	.	.	.	.	.	.	.	.	.	3200	.	.	.	.	.		.	.	.	.	3210	.	.	.	.	.	.				.	.	.	3220	.	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190														.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	R	E	V	E	V	I	Y	R	.	.	.	.	.	.	.	.	.	.	.	.	.	S	K	A	C	L	I	Q	R	D	G	E	M	E	E	S	K	Q	Q	L	I	D	K	L	L	T	R	I	Q	G	V	I	Q	A
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	H	Q	V	A	K	Y	I	I	M	G	P	P	E	T	P	A	I	H	Q	P	V	D	L	M	D	F	T	I	N	L	N	R	W	R	S	L	P	K	P	L	Q	E	R	F	I	A	A	V	H	E	Y	S	W	I
Template Known Secondary structure														T	T	S	S		S	S		S	S															S
Template Predicted Secondary structure
Template SS confidence
		3228	.	3230	.	.	.	.	.	.	.	.	.	3240	.	.	.	.	.	.	.	.	.	3250	.	.	.	.	.	.	.	.	.	3260	.	.	.	.	.	.	.	.	.	3270	.	.	.	.	.	.	.	.	.	3280	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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