Job Description P60757 Confidence 86.97% Date Thu Jan 5 12:07:08 GMT 2012 Rank 40 Aligned Residues 160 % Identity 13% Template c2g29A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein nrta; PDBTitle: crystal structure of the periplasmic nitrate-binding2 protein nrta from synechocystis pcc 6803 Resolution 1.50 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.										.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.
Query Sequence		V	M	D	G	V	V	D	L	G	I	I	G	E	N	V	L	E	E	E	L	L	N	R	R	A	Q	G	E	D	P	R	Y	F	T	L	R	R	L	D	F	G	G	C	R	L	S	L	A	T	P	.	.	.	.	.	.	.	.	.	V	D	E	A	W	D	G	P	L	S	L	N	G	K	R	I	A	T	S	Y	P
Query Conservation																																																				.	.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	A	S	G	G	I	D	G	A	H	I	L	T	P	M	P	Y	L	I	T	M	G	T	V	T	D	G	K	P	T	P	M	Y	I	L	A	R	L	N	V	N	G	Q	G	I	Q	L	G	N	N	Y	K	D	L	K	V	G	T	D	A	A	P	L	K	E	A	F	A	K	V	T	D	P	K	V	A	M	T	F	P
Template Known Secondary structure		G	G	G	T	S		S						T										T	T	S	S	S													B	S								G	G	G	G	G	G				S			T	T							T	S	S	S						S	S	T
Template Predicted Secondary structure
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		133						.	.	.	.	.	.	140	.	.	.	.					.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.							190	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.												.	.	.	.											.																																				.	.	.	.	.	.
Query SS confidence			.	.	.	.	.												.	.	.	.											.																																				.	.	.	.	.	.
Query Sequence		H	.	.	.	.	.	L	L	K	R	Y	L	D	Q	K	G	I	.	.	.	.	S	F	K	S	C	L	L	N	G	S	.	V	E	V	A	P	R	A	G	L	A	D	A	I	C	D	L	V	S	T	G	A	T	L	E	A	N	G	L	R	E	V	E	V	I	Y	.	.	.	.	.	.	R	S	K	A	C	L	I
Query Conservation			.	.	.	.	.												.	.	.	.											.																																				.	.	.	.	.	.
Alig confidence			.	.	.	.	.												.	.	.	.											.																																				.	.	.	.	.	.
Template Conservation
Template Sequence		G	G	T	H	D	M	W	I	R	Y	W	L	A	A	G	G	M	E	P	G	K	D	F	S	T	I	V	V	P	P	A	Q	M	V	A	N	V	K	V	N	A	M	E	S	F	C	V	G	E	P	W	P	L	Q	T	V	N	Q	G	V	G	Y	Q	A	L	T	T	G	Q	L	W	K	D	H	P	E	K	A	F	G
Template Known Secondary structure		T	S													T	T			B	T	T	T	B							G	G	G							T	T	S		S						T	T									T	S							G	G	G	T	B	T	T		B
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	D	G	E	M	E	E	S	K	Q	Q	L	I	D	K	L	L	T	R	I	Q	G	V	I	Q
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence		M	R	A	D	W	V	D	.	Q	N	P	K	A	A	K	A	L	L	M	A	V	M	E	A	Q	Q
Template Known Secondary structure									.
Template Predicted Secondary structure									.
Template SS confidence
		273	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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