Job Description P0A8U0 Confidence 3.21% Date Thu Jan 5 11:08:44 GMT 2012 Rank 89 Aligned Residues 72 % Identity 19% Template c3k1qA_ PDB info PDB header:virus Chain: A: PDB Molecule:vp1, the protein that forms the mrna-capping PDBTitle: backbone model of an aquareovirus virion by cryo-electron2 microscopy and bioinformatics Resolution 4.50 Å

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		26	.	.	.	30	.	.							.	.	.	.	.	.	.	40	.	.	.											.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Query Sequence		S	W	P	L	S	E	E	.	.	.	.	.	.	L	Y	G	V	P	S	P	C	I	I	S	.	.	.	.	.	.	.	.	.	.	T	T	E	D	A	V	Y	W	Q	P	Q	P	F	T	G	E	Q	N	V	N	A	V	E	R	A	F	D	I	V	I	Q	P	T	I	H	T	F	Y	T	T	Q	F	A	G	D	M
Query Conservation									.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	W	P	E	S	P	F	V	P	P	I	G	P	F	Y	A	P	F	R	P	V	N	F	P	F	T	T	G	S	Y	T	V	V	P	D	A	S	R	P	L	R	L	L	P	Q	Y	R	N	A	T	I	T	V	Q	Q	A	D	D	A	Y	E	D	T	A	L	S	P	L	I	T	T	H	G	F	C	V	T	G	G	V
Template Known Secondary structure		S	S	T	T	S						S	S			B	S		S									B									B		S																										B							B				S	B	S
Template Predicted Secondary structure
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
		90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	Q	F	G	D	I	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	T	S	I	Y	D	I	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		439	440	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions