Job Description P0AAC6 Confidence 7.33% Date Thu Jan 5 11:12:33 GMT 2012 Rank 5 Aligned Residues 146 % Identity 12% Template d1iwga8 SCOP info Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain Resolution 3.50

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	S	S	H	D	R	T	S	L	L	S	T	H	K	V	L	R	N	T	Y	F	L	L	S	L	T	L	A	F	S	A	I	T	A	T	A	S	T	V	L	M	L	P	S	P	G	L	I	L	T	L	V	G	M	Y	G	L	M	F	L	T	Y	K	T	A	N	K	P	T	G	I	I	S	A	F	A	F	T	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	A	Y	L	F	V	R	L	P	S	S	F	L	P	D	S	G	N	Q	A	P	S	L	Y	A	I	S	L	I	V	V	F	L	C	L	A	A	L	Y	E	S	W	S	I	P	F	S	V	M	L	V	V	P	L	G	V	I	G	A	L	L	A	A	T	F	R	G	L	T	N	D	V	Y	F	Q	V	G	L	L	T
Template Known Secondary structure								S	S		B		S	S					T	T																			T	T		S	S	S					G	G	G																T	T			B
Template Predicted Secondary structure
Template SS confidence
		552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.																					.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	L	G	Y	I	L	G	P	I	L	N	T	Y	L	S	A	G	M	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	A	M	A	L	G	G	T	A	L	V	F	F	C	C	S	A	Y	V	L	T	T	R	K	D	M	S	F	L	G	G	M	L	M	A	G	I	V	V
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	I	G	L	S	A	K	N	A	I	L	I	V	E	F	A	K	D	L	M	D	K	E	G	K	G	L	I	E	A	T	L	D	A	V	R	M	R	L	R	P	I	L	M	T	S	L	A	F	I	L	G	V	M	P	L	V	I	S	T	G	A	G	S	G	A	Q	N	A	V	G	T	G	V	M	G	G	M	V	T
Template Known Secondary structure																					T	T	S	S				T	T									T	T																				T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		934	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.
		145	.	.	.	.	150
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	I	G	M	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	V	L	A	I
Template Known Secondary structure				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		1014	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions