Job Description P07012 Confidence 100.00% Date Thu Jan 5 10:59:58 GMT 2012 Rank 3 Aligned Residues 337 % Identity 34% Template c3d5cX_ PDB info PDB header:ribosome Chain: X: PDB Molecule:peptide chain release factor 1; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 30s subunit, release factor 1 (rf1), two trna, and3 mrna molecules of the second 70s ribosome. the entire crystal4 structure contains two 70s ribosomes as described in remark 400. Resolution 3.21 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		D	Y	D	A	K	K	E	R	L	E	E	V	N	A	E	L	E	Q	P	D	V	W	N	E	P	E	R	A	Q	A	L	G	K	E	R	S	S	L	E	A	V	V	D	T	L	D	Q	M	K	Q	G	L	E	D	V	S	G	L	L	E	L	A	V	E	A	D	D	E	E	T	F	.	N	E	A	V	A	E	L	D
Query Conservation																																																																									.
Alig confidence																																																																									.
Template Conservation
Template Sequence		K	L	D	R	L	E	E	E	Y	R	E	L	E	A	L	L	S	D	P	E	V	L	K	D	K	G	R	Y	Q	S	L	S	R	R	Y	A	E	M	G	E	V	I	G	L	I	R	E	Y	R	K	V	L	E	D	L	E	Q	A	E	S	L	L	D	D	P	E	L	K	E	M	A	K	A	E	R	E	A	L	L	A
Template Known Secondary structure							T										T	T	S	T	T	T	T	S																																					T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	E	E	K	L	A	Q	L	E	F	R	R	M	F	S	G	E	Y	D	S	A	D	C	Y	L	D	I	Q	A	G	S	G	G	T	E	A	Q	D	W	A	S	M	L	E	R	M	Y	L	R	W	A	E	S	R	G	F	K	T	E	I	I	E	E	S	E	G	E	V	A	G	I	K	S	V	T	I	K	I	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	K	E	A	L	E	K	E	L	E	R	H	L	L	P	K	D	P	M	D	E	R	D	A	I	V	E	I	R	A	G	T	G	G	E	E	A	A	L	F	A	R	D	L	F	N	M	Y	L	R	F	A	E	E	M	G	F	E	T	E	V	L	D	S	H	P	T	D	L	G	G	F	S	K	V	V	F	E	V	R
Template Known Secondary structure															S	T	T																S	S																							T												T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	Y	A	Y	G	W	L	R	T	E	T	G	V	H	R	L	V	R	K	S	P	F	D	S	G	G	R	R	H	T	S	F	S	S	A	F	V	Y	P	E	V	D	D	D	I	D	I	E	I	N	P	A	D	L	R	I	D	V	Y	R	T	S	G	A	G	G	Q	H	V	N	R	T	E	S	A	V	R	I	T
Query Conservation
Alig confidence																																												.
Template Conservation																																												.
Template Sequence		G	P	G	A	Y	G	T	F	K	Y	E	S	G	V	H	R	V	Q	R	V	P	V	T	E	T	Q	G	R	I	H	T	S	T	A	T	V	A	V	L	P	K	A	.	E	E	E	D	F	A	L	N	M	D	E	I	R	I	D	V	M	R	A	S	G	P	G	G	Q	G	V	N	T	T	D	S	A	V	R	V	V
Template Known Secondary structure		S	T	T						G	G	G		S									S	S		S	S																	.									G	G	G										S
Template Predicted Secondary structure																																												.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.		.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		H	I	P	T	G	I	V	T	Q	C	Q	N	D	R	S	Q	H	K	N	K	D	Q	A	M	K	Q	M	K	A	K	L	Y	E	L	E	M	Q	K	K	N	A	E	K	Q	A	M	E	D	N	K	S	D	I	G	.	W	G	S	Q	I	R	S	Y	V	L	D	D	S	R	I	K	D	L	R	T	G	V	E	T	R
Query Conservation																																																								.
Alig confidence																																																								.
Template Conservation
Template Sequence		H	L	P	T	G	I	M	V	T	C	Q	D	S	R	S	Q	I	K	N	R	E	K	A	L	M	I	L	R	S	R	L	L	E	M	K	R	A	E	E	A	E	R	L	R	K	T	R	L	A	Q	I	G	T	G	E	R	S	E	K	I	R	T	Y	N	F	P	Q	S	R	V	T	D	H	R	I	G	F	T	T	H
Template Known Secondary structure			T	T	T	T								S	S																																					S		G	G	G	G	S		S	S					T	T	T	T					T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	Q	A	V	L	D	G	S	L	D	Q	F	I	E	A	S	L	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	L	E	G	V	L	S	G	H	L	T	P	I	L	E	A	L	K	R	A
Template Known Secondary structure							T	T	T
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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