Job Description P07012 Confidence 100.00% Date Thu Jan 5 10:59:58 GMT 2012 Rank 6 Aligned Residues 307 % Identity 30% Template c1zbtA_ PDB info PDB header:translation Chain: A: PDB Molecule:peptide chain release factor 1; PDBTitle: crystal structure of peptide chain release factor 1 (rf-1) (smu.1085)2 from streptococcus mutans at 2.34 a resolution Resolution 2.34 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		P	D	V	W	N	E	P	E	R	A	Q	A	L	G	K	E	R	S	S	L	E	A	V	V	D	T	L	D	Q	M	K	Q	G	L	E	D	V	S	G	L	L	E	L	A	V	E	A	D	D	E	E	T	F	N	.	E	A	V	A	E	L	D	A	L	E	E	K	L	A	Q	L	E	F	R	R	M	F	S	G	E
Query Conservation																																																								.
Alig confidence																																																								.
Template Conservation
Template Sequence		X	N	I	Y	D	Q	L	Q	A	V	E	D	R	Y	E	E	L	R	E	E	A	N	S	R	E	T	V	A	V	Y	R	E	Y	K	Q	V	V	Q	N	I	A	D	A	Q	E	X	P	E	L	E	E	X	A	K	E	E	L	K	N	S	K	V	A	K	E	E	Y	E	E	K	L	R	F	L	L	L	P	K	D	P
Template Known Secondary structure																																																																										T	T	T	S				T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	S	A	D	C	Y	L	D	I	Q	A	G	S	G	G	T	E	A	Q	D	W	A	S	M	L	E	R	M	Y	L	R	W	A	E	S	R	G	F	K	T	E	I	I	E	E	S	E	G	E	V	A	G	I	K	S	V	T	I	K	I	S	G	D	Y	A	Y	G	W	L	R	T	E	T	G	V	H	R	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	D	D	K	N	I	I	L	E	I	R	G	A	A	G	G	D	E	A	A	L	F	A	G	D	L	L	N	X	Y	Q	K	Y	A	E	N	Q	G	W	K	F	E	V	X	E	A	S	A	N	G	V	G	G	L	K	E	V	V	A	X	V	S	G	Q	S	V	Y	S	K	L	K	Y	E	S	G	A	H	R	V	Q
Template Known Secondary structure		T	T	T	S										T	T	T																						T												S	S	S											S	T	T						G	G	G
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	K	S	P	F	D	S	G	G	R	R	H	T	S	F	S	S	A	F	V	Y	P	E	V	D	D	D	I	D	I	E	I	N	P	A	D	L	R	I	D	V	Y	R	T	S	G	A	G	G	Q	H	V	N	R	T	E	S	A	V	R	I	T	H	I	P	T	G	I	V	T	Q	C	Q	N	D	R	S	Q	H	K
Query Conservation
Alig confidence																										.																				.	.	.	.	.	.	.	.	.
Template Conservation																										.																				.	.	.	.	.	.	.	.	.
Template Sequence		R	V	P	V	T	E	S	Q	G	R	V	H	T	S	T	A	T	V	L	V	X	P	E	V	.	E	E	V	E	Y	E	I	D	P	K	D	L	R	V	D	I	Y	H	A	.	.	.	.	.	.	.	.	.	K	V	A	T	A	V	R	I	I	H	L	P	T	N	I	K	V	E	X	Q	E	E	R	T	Q	Q	K
Template Known Secondary structure					T	T		S	S																	.		G	G	G	S				G	G	G									.	.	.	.	.	.	.	.	.											T	T	T	T							S	S	S	S
Template Predicted Secondary structure																										.																				.	.	.	.	.	.	.	.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230										.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	D	Q	A	M	K	Q	M	K	A	K	L	Y	E	L	E	M	Q	K	K	N	A	E	K	Q	A	M	E	D	N	K	S	D	I	G	W	G	S	Q	I	R	S	Y	V	L	D	D	S	R	I	K	D	L	R	T	G	V	E	T	R	N	T	Q	A	V	L	D	G	S	L	D	Q	F	I	E	A	S	L	K
Query Conservation
Alig confidence																										.	.	.
Template Conservation																										.	.	.
Template Sequence		N	R	D	K	A	X	K	I	I	R	A	R	V	A	D	H	F	A	Q	I	A	Q	D	E	.	.	.	Q	D	A	T	V	G	T	G	D	R	S	E	R	I	R	T	Y	N	F	P	Q	N	R	V	T	D	H	R	I	G	L	T	L	Q	K	L	D	S	I	L	S	G	K	L	D	E	V	I	D	A	L	I	L
Template Known Secondary structure																										.	.	.	T					S		S		T	T	S							T	T	T	T					T	T	T	T				S							T	T
Template Predicted Secondary structure																										.	.	.
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290				.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		363
Predicted Secondary structure
Query SS confidence
Query Sequence		A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		348

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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