 |
Job Description | P18473 | Confidence | 36.60% | Date | Thu Jan 5 11:37:03 GMT 2012 |
Rank | 141 | Aligned Residues | 101 |
% Identity | 13% | Template | c2l5oA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:putative thioredoxin; |
PDBTitle: solution structure of a putative thioredoxin from neisseria2 meningitidis
|
Resolution | UNK |
|
 |
  |   |
92 | . | . | . | . | . | . | . | 100 | . | . | |
|
. | . | . | . | . | . | . | 110 | . | . | . | . | . | |
|
. | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . |
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |
|  |  |  |  |  |  |
|
|
|  |  |
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | L | Y | F | V | S | F | S | I | P | E | . |
. |
E | G | L | K | R | M | L | G | E | T | R | H | F | . |
. |
G | I | P | A | T | L | R | G | M | V | N | N | D | L | K | T | T | A | E | A | V | L | S | L | V | K | D | G | A | T | D | G | V | Q | I | D | P | T | L | F | S | Q | Y | G | I | R | T | V | P | A | L | V |
Query Conservation |   |
  |   |
|
|
|
|   |
|
|
|   | . | . |   |   |
|   |   |
|   |   |   |
|   |   |   | . | . |
|   |   |   |
|
|
|
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |
|
|
|   |
|
|   |   |
|   |
|   |   |
|
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
Template Sequence |   |
L | I | N | F | W | F | P | S | C | P | G | C | V | S | E | M | P | K | I | I | K | T | A | N | D | Y | K | N | K | N | F | Q | V | L | A | V | A | Q | P | I | D | P | I | E | S | V | R | Q | Y | V | K | D | Y | G | L | P | F | T | V | M | Y | D | A | D | K | A | V | G | Q | A | F | G | T | Q | V | Y | P | T | S | V |
Template Known Secondary structure |   |
 |  |  |  |  |
| T | T |
| T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  | G | G | G | T | T |  |  |  |  |  |  |  |
| T | T | S |
|  |  |  |  |  |  |  |  |  |  | T | T |
|
| S |  |  |  |  |
| S | S |
|  |  |  |  |  |  | T |
|
| S | S | S |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
29 | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . |
  |
  |   |
168 | . | 170 | . | . | . | |
|
. | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
| . | . |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | F | C | S | Q | G | . |
. |
Y | D | I | I | R | G | N | L | R | V | G | Q | A | L | E | K | V | A | A |
Query Conservation |   |
  |   |   |   |   |   | . | . |   |
|   |
|   |
|   |
|
|
|   |   |
|
|
|   |   |
|   |
Alig confidence |   |
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |   |
|   |
|   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |
Template Sequence |   |
L | I | G | K | K | G | E | I | L | K | T | Y | V | G | E | P | D | F | G | K | L | Y | Q | E | I | D | T |
Template Known Secondary structure |   |
 |  |
| S | S | S |
|
|
|  |  |  |  | S | S |
|
|  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
109 | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|