Job Description P55798 Confidence 98.74% Date Thu Jan 5 12:06:12 GMT 2012 Rank 44 Aligned Residues 188 % Identity 15% Template c3ivdA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:nucleotidase; PDBTitle: putative 5'-nucleotidase (c4898) from escherichia coli in2 complex with uridine Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		18	.	20	.	.	.	.	.	.	.	.																			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.						.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.											.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.											.
Query Sequence		H	I	W	L	S	G	D	I	H	G	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	Q	L	R	R	K	L	W	H	C	R	F	D	P	W	R	D	L	L	I	S	V	G	D	V	I	D	R	G	P	Q	S	L	R	.	.	.	.	.	C	L	Q	L	L	E	Q	H	W	V	.
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.											.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.											.
Template Conservation
Template Sequence		T	I	I	Y	T	N	D	L	H	A	H	V	E	P	Y	K	V	P	W	I	A	D	G	K	R	D	I	G	G	W	A	N	I	T	T	L	V	K	Q	E	K	A	K	N	K	A	T	W	F	F	D	A	G	D	Y	F	T	G	P	Y	I	S	S	L	T	K	G	K	A	I	I	D	I	X	N	T	X	P	F	D
Template Known Secondary structure										T	T			S		B			T	T	S	G	G	G	T	S		B																		S	S							S			S	S	S	S					T	T	T	T								T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		74	.	.	.	.	.	80	.						.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.																																							100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure										.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	A	V	R	G	N	H	E	.	.	.	.	.	Q	M	A	M	D	A	L	A	S	Q	Q	M	S	L	W	L	M	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	D	W	F	I	A	L	A	D	N
Query Conservation										.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	T	I	G	N	H	E	F	D	H	G	W	D	N	T	L	L	Q	L	S	Q	A	K	F	P	I	V	Q	G	N	I	F	Y	Q	N	S	S	K	S	F	W	D	K	P	Y	T	I	I	E	K	D	G	V	K	I	G	V	I	G	L	H	G	V	F	A	F	N	D	T	V	S	A	A	T	R	V	G	I	E
Template Known Secondary structure							G	G	G	G	T	T										T	T		S	S		B				S				T	T	S	S		B	S	S	S		S							T	T																		S		G	G	G	S	T	T
Template Predicted Secondary structure
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		Q	Q	K	Q	A	K	T	A	L	E	K	C	Q	H	L	P	F	I	L	E	V	H	S	R	T	G	K	H	V	I	A	H	A	D	Y	P	D	D	V	Y	E	W	Q	K	D	V	D	L	H	Q	V	L	W	S	R	S	R	L	G	E	R	Q	K	G	Q	G	I	T	G	A	D	H	F	W	F	G	H	T	P	.
Query Conservation																																																																																	.
Alig confidence																					.	.	.	.	.																													.	.	.	.	.	.																						.
Template Conservation																					.	.	.	.	.																													.	.	.	.	.	.
Template Sequence		A	R	D	E	I	K	W	L	Q	R	Y	I	D	E	L	K	G	K	V	.	.	.	.	.	D	L	T	V	A	L	I	H	E	G	V	P	A	R	Q	S	S	X	G	G	T	D	V	R	R	A	L	D	.	.	.	.	.	.	K	D	I	Q	T	A	S	Q	V	K	G	L	D	I	L	I	T	G	H	A	H	V
Template Known Secondary structure																	T	T	T		.	.	.	.	.	S									S	S						S	S	G	G	G	S	S						.	.	.	.	.	.										S	S								S	S
Template Predicted Secondary structure																					.	.	.	.	.																													.	.	.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.						.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.							.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	L	R	H	R	V	D	I	G	N	L	H	Y	I	D	T	G	A	V	F	G	G	E	L	T	L	V	Q	L
Query Conservation		.
Alig confidence		.																			.
Template Conservation																					.
Template Sequence		G	T	P	E	P	I	K	V	G	N	T	L	I	L	S	T	D	S	G	.	G	I	D	V	G	K	L	V	L
Template Known Secondary structure				S	S					T	T								S	T	.	T	S
Template Predicted Secondary structure																					.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions