Job Description P55798 Confidence 99.39% Date Thu Jan 5 12:06:12 GMT 2012 Rank 31 Aligned Residues 169 % Identity 15% Template c3auzA_ PDB info PDB header:recombination Chain: A: PDB Molecule:dna double-strand break repair protein mre11; PDBTitle: crystal structure of mre11 with manganese Resolution 3.21 Å

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		18	.	20	.	.	.	.	.	.														.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70										.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.
Query Sequence		H	I	W	L	S	G	D	I	H	.	.	.	.	.	.	.	.	.	.	.	.	.	G	C	L	E	Q	L	R	R	K	L	W	H	C	R	F	D	P	W	R	D	L	L	I	S	V	G	D	V	I	D	R	G	P	Q	S	L	R	C	L	Q	L	L	E	Q	.	.	.	.	.	.	.	.	.	H	W	V	C	A
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.														.																															.	.	.	.	.	.	.	.	.
Template Conservation																																					.
Template Sequence		M	F	V	H	I	A	D	N	H	L	G	Y	R	Q	Y	N	L	D	D	R	E	K	D	I	Y	D	S	F	K	L	C	I	K	K	I	.	L	E	I	K	P	D	V	V	L	H	S	G	D	L	F	N	D	L	R	P	P	V	K	A	L	R	I	A	M	Q	A	F	K	K	L	H	E	N	N	I	K	V	Y	I
Template Known Secondary structure											B	T			G	G	G																				.						S						S		S	B	S	S	S	S																			T	T
Template Predicted Secondary structure																																					.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.		.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		76	.	.	.	80	.														.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	R	G	N	H	E	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	M	A	M	D	A	L	A	S	Q	Q	M	S	L	W	L	M	N	G	G	D	W	F	I	A	L	A	D	N	Q	Q	K	Q	A	K	T	A	L	E	K	C	Q	H	L	P	F	I	L	E	V	H	S	R	T	G	K	H	V	I	A	H
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.																																																	.	.
Template Conservation																																																																					.	.
Template Sequence		V	A	G	N	H	E	M	P	R	R	L	G	E	E	S	P	L	A	L	L	K	D	Y	V	K	I	L	D	G	K	D	V	I	N	V	N	G	E	E	I	F	I	C	G	T	Y	Y	H	K	K	S	K	R	E	E	M	L	D	K	L	K	N	F	E	S	E	A	.	.	K	N	Y	K	K	K	I	L	M	L	H
Template Known Secondary structure					G	G	G	S			S	T	T				S	G	G	G	S	T	T	T					S							T	T	T													G	G	G																.	.		T		S	S
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	Y	P	D	D	V	Y	E	W	Q	K	D	V	D	L	H	Q	V	L	W	S	R	S	R	L	G	E	R	Q	K	G	Q	G	I	T	G	A	D	H	F	W	F	G	H	T	P	L	R	H	R	V	D	I	G	N	L	H	Y	I	D	T	G	A
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	G	I	N	P	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	L	D	Y	E	L	E	H	F	D	L	P	K	F	S	Y	Y	A	L	G	H	I	H	K	R	I	L	E	R	F	N	D	G	I	L	A	Y	S	G	S
Template Known Secondary structure		S		B	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S		S	B		G	G	G	S				S						S		S	S							T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.																		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions