Job Description P38392 Confidence 35.49% Date Thu Jan 5 11:58:06 GMT 2012 Rank 3 Aligned Residues 76 % Identity 16% Template d2d1ha1 SCOP info DNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain TrmB-like Resolution 2.05

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.											.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	R	V	L	L	R	L	S	E	K	E	I	A	V	F	K	D	F	L	K	T	G	N	L	I	I	T	S	P	C	R	N	P	V	.	.	.	.	.	.	.	.	.	.	M	K	K	L	E	R	K	G	I	I	Q	H	Q	S	D	S	A	N	C	S	Y	Y	L	V	T	E	K	Y	S	H	F	M	K	L	F	W
Query Conservation																																				.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation																																																														.	.
Template Sequence		I	R	C	C	Y	K	I	T	D	T	D	V	A	V	L	L	K	X	V	E	I	E	K	P	I	T	S	E	E	L	A	D	I	F	K	L	S	K	T	T	V	E	N	S	L	K	K	L	I	E	L	G	L	V	V	R	T	K	T	P	.	.	K	Y	Y	Y	S	I	S	S	N	I	L	E	K	I	R	N	D	L
Template Known Secondary structure							T																	S												T																T	T	S								.	.								T	T
Template Predicted Secondary structure																																																														.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.			.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		154	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	S	R	S	R	R	F	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	N	C	A	K	R	X	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions