Job Description P02943 Confidence 6.67% Date Thu Jan 5 10:57:48 GMT 2012 Rank 36 Aligned Residues 263 % Identity 13% Template d3prna_ SCOP info Transmembrane beta-barrels Porins Porin Resolution 1.90

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	F	H	G	Y	A	R	S	G	I	G	W	T	G	S	G	G	E	Q	Q	C	F	Q	T	T	G	A	Q	S	K	Y	R	L	G	N	E	C	E	T	Y	A	E	L	K	L	G	Q	E	V	W	K	E	G	D	K	S	F	Y	F	D	T	N	V	A	Y	S	V	A	Q	Q	N	D	W	E	A	T	D	P	A
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.
Template Sequence		I	S	L	N	G	Y	G	R	F	G	L	Q	Y	V	E	D	R	G	V	G	L	E	.	.	.	.	.	.	.	.	.	.	.	.	D	T	I	I	S	S	R	L	R	I	N	I	V	G	T	T	E	T	D	Q	G	V	T	F	G	A	K	L	R	M	Q	W	D	D	G	D	A	F	A	G	T	A	G	.	.	.
Template Known Secondary structure																T	T		S	T	T			.	.	.	.	.	.	.	.	.	.	.	.	S																		T	T	S													T	T		G	G	G				B	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.													.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	E	A	N	V	Q	G	K	N	L	I	E	W	L	P	G	S	T	I	W	A	G	K	R	F	Y	Q	R	H	D	V	H	M	I	D	F	Y	Y	W	D	I	S	G	P	G	A	G	L	E	N	I	D	V	G	F	G	K	L	S	L	A	A	T	R	S	S	E	A	G	G	S	S	S	F	A	S	N	N	I
Query Conservation
Alig confidence		.											.	.	.	.	.																																								.	.	.	.	.	.	.	.
Template Conservation		.											.	.	.	.	.																																								.	.	.	.	.	.	.	.
Template Sequence		.	N	A	A	Q	F	W	T	S	Y	N	.	.	.	.	.	G	V	T	V	S	V	G	N	V	D	T	A	F	D	S	V	A	L	T	Y	D	S	E	M	G	Y	E	W	S	S	F	G	D	A	Q	S	S	F	F	.	.	.	.	.	.	.	.	A	Y	N	S	K	Y	D	A	S	G	A	L	D	N	Y	N	G
Template Known Secondary structure		.										T	.	.	.	.	.	T							S								S	S	S	T	T	T	T		B	T	T	T	T	B		T	T	S			S				.	.	.	.	.	.	.	.					S			T	T	S	T	T	T	T
Template Predicted Secondary structure		.											.	.	.	.	.																																								.	.	.	.	.	.	.	.
Template SS confidence
			67	.	.	70	.	.	.	.	.	.						.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.									.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.						.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220					.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.																				.	.	.	.
Query SS confidence																		.	.	.	.	.																				.	.	.	.
Query Sequence		Y	D	Y	T	N	E	T	A	N	D	V	F	D	V	R	L	.	.	.	.	.	A	Q	M	E	I	N	P	G	G	T	L	E	L	G	V	D	Y	G	R	.	.	.	.	A	N	L	R	D	N	Y	R	L	V	D	G	A	S	K	D	G	W	L	F	T	A	E	H	T	Q	S	V	L	K	G	F	N	K	F	V
Query Conservation																		.	.	.	.	.																				.	.	.	.
Alig confidence																		.	.	.	.	.																				.	.	.	.																												.	.	.	.
Template Conservation																																																																									.	.	.	.
Template Sequence		I	A	V	T	Y	S	I	S	G	V	N	L	Y	L	S	Y	V	D	P	D	Q	T	V	D	S	S	L	V	T	E	E	F	G	I	A	A	D	W	S	N	D	M	I	S	L	A	A	A	Y	T	T	D	A	G	G	I	V	D	N	D	I	A	F	V	G	A	A	Y	K	F	N	.	.	.	.	D	A	G	T	V
Template Known Secondary structure									S	S										T	T	T	T	S		G	G	G	S													S	S										S	G	G	G		T	T													S	.	.	.	.	S	S
Template Predicted Secondary structure																																																																									.	.	.	.
Template SS confidence
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.					.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	Y	A	T	D	S	M	T	S	Q	G	K	G	L	S	Q	G	S	G	V	A	F	D	N	E	K	F	A	Y	N	I	N	N	N	G	H	M	L	R	I	L	D	H	G	A	I	S	M	G	D	N	W	D	M	M	Y	V	G	M	Y	Q	D	I	N	W	D	N	D	N	G	T	K	W	W	T	V	G	I	R
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.									.	.	.																		.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.									.	.	.																		.	.	.	.
Template Sequence		G	L	N	W	Y	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	S	T	A	G	D	Q	V	T	L	.	.	Y	G	N	Y	A	F	G	A	.	.	.	T	T	V	R	A	Y	V	S	D	I	D	R	A	G	A	D	T	.	.	.	.	A	Y	G	I	G
Template Known Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S	T	T		S					.	.							T	T	.	.	.												S	T	T				.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.									.	.	.																		.	.	.	.
Template SS confidence
		209	210	.	.	.	.	.																								.	.	.	.	220	.	.	.	.	.	.			.	.	.	230	.	.	.	.				.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.					.	.	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	M	Y	K	W	T	P	I	M	S	T	V	M	E	I	G	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	D	Y	Q	F	A	E	G	V	K	V	S	G	S	V	Q	S
Template Known Secondary structure								T	T
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions