Job Description P02943 Confidence 23.60% Date Thu Jan 5 10:57:48 GMT 2012 Rank 24 Aligned Residues 276 % Identity 13% Template d2fgqx1 SCOP info Transmembrane beta-barrels Porins Porin Resolution 1.45

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	F	H	G	Y	A	R	S	G	I	G	W	T	G	S	G	G	E	Q	Q	C	F	Q	T	T	G	A	Q	S	K	Y	R	L	G	N	E	C	E	T	Y	A	E	L	K	L	G	Q	E	V	W	K	E	G	D	K	S	F	Y	F	D	T	N	V	A	Y	S	V	A	Q	Q	N	D	W	E	A	T	D	P	A
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.																																															.	.
Template Conservation																				.	.	.	.	.	.	.	.																																															.	.
Template Sequence		V	T	L	F	G	I	V	D	T	N	V	A	Y	V	N	K	D	A	.	.	.	.	.	.	.	.	A	G	D	S	R	Y	G	L	G	T	S	G	A	S	T	S	R	L	G	L	R	G	T	E	D	L	G	G	G	L	K	A	G	F	W	L	E	G	E	I	F	G	D	D	G	N	.	.	A	S	G	F	N	F
Template Known Secondary structure																S			T	.	.	.	.	.	.	.	.	T	S										S	S	S														T	T													T	T	T	T	S	.	.	T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.																																															.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.									.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.			.	.	70	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.											.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.														.	.	.	.	.	160	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	R	E	A	N	V	Q	G	K	N	L	I	E	W	L	P	G	S	T	I	W	A	G	K	R	F	.	.	.	.	.	.	.	.	.	.	Y	Q	R	H	D	V	H	M	I	D	F	Y	Y	W	D	I	S	G	P	G	A	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	E	N	I	D	V	G	F	G
Query Conservation																												.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.												.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.
Template Sequence		K	R	R	S	T	V	S	L	S	G	.	.	.	.	.	N	F	G	E	V	R	L	G	R	D	L	V	P	T	S	Q	K	L	T	S	Y	D	L	F	S	A	T	G	I	G	P	F	M	G	F	R	N	W	A	A	G	Q	G	A	D	D	N	G	I	R	A	N	N	L	I	S	Y	Y	T	P	N	F	G	G	F
Template Known Secondary structure			S									.	.	.	.	.	T	T						S	S										G	G	G		T	T	T	T		S	S	S	S				S	S		T	T				S	T	T	T	T	S	S			S	S									B	T	T
Template Predicted Secondary structure												.	.	.	.	.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.						.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	S	L	A	A	T	R	S	S	E	A	G	G	S	S	S	F	A	S	N	N	I	Y	D	Y	T	N	E	T	A	N	D	V	F	D	V	R	L	A	Q	M	E	I	N	P	G	G	T	L	E	L	G	V	D	Y	G	R	A	N	L	R	D	N	Y	R	L	V	D	G	A	S	K	D	G	W	L	F	T	A
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.																.	.	.	.																	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.																.	.	.	.																	.	.	.
Template Sequence		N	A	G	F	G	Y	A	F	D	E	K	Q	T	I	.	.	.	.	.	.	.	.	.	.	.	G	T	A	D	S	V	G	R	Y	I	G	G	Y	V	A	.	.	.	.	Y	D	N	G	P	L	S	A	S	L	G	L	A	Q	Q	K	.	.	.	T	A	V	G	G	L	A	T	D	R	D	E	I	T	L	G	A
Template Known Secondary structure											T	T			B	.	.	.	.	.	.	.	.	.	.	.	T	T	B	S	S	T	T									.	.	.	.				S	S												.	.	.				T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.																.	.	.	.																	.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.												.	.	.	.	.	.	.	170	.	.	.	.	.	.	.					.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.				.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	H	T	Q	S	V	L	K	G	F	N	K	F	V	V	Q	Y	A	T	D	S	M	T	S	Q	G	K	G	L	S	Q	G	S	G	V	A	F	D	N	E	K	F	A	Y	N	I	N	N	N	G	H	M	L	R	I	L	D	H	G	A	I	S	M	G	D	N	W	D	M	M	Y	V	G	M	Y	Q	D	I	N	W
Query Conservation
Alig confidence							.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Template Conservation							.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Template Sequence		S	Y	N	F	G	.	.	.	.	V	A	K	L	S	G	L	L	Q	Q	T	K	F	K	R	D	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	I	K	T	N	S	Y	M	L	G	A	S	A	P	V	G	G	V	G	E	V	K	L	Q	Y	A	L	Y	D	Q	.	.
Template Known Secondary structure						S	.	.	.	.	S															T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	T	T	T													.	.
Template Predicted Secondary structure							.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.
Template SS confidence
		211	.	.	.	.					.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.																					.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	D	N	G	T	K	W	W	T	V	G	I	R	P	M	Y	K	W	T	P	I	M	S	T	V	M	E	I	G	Y	D	N	V	E	S	Q	R	T
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	K	A	I	D	S	K	A	H	Q	I	T	L	G	Y	V	H	N	L	S	K	R	T	A	L	Y	G	N	L	A	F	L	K	N	K	D	A	S	T
Template Known Secondary structure		.	G	G	G	T														S	S	S	S														T	T
Template Predicted Secondary structure		.
Template SS confidence
			265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions