Job Description P02943 Confidence 25.01% Date Thu Jan 5 10:57:48 GMT 2012 Rank 22 Aligned Residues 192 % Identity 14% Template c2iwvD_ PDB info PDB header:ion channel Chain: D: PDB Molecule:outer membrane protein g; PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation Resolution 2.3 Å

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		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.				.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.
Query SS confidence																																													.	.	.
Query Sequence		G	T	L	E	L	G	V	D	Y	G	R	A	N	L	R	D	N	Y	R	L	V	D	G	A	S	K	D	G	W	L	F	T	A	E	H	T	Q	S	V	L	K	G	F	.	.	.	N	K	F	V	V	Q	Y	A	T	D	S	M	T	S	Q	G	K	G	L	S	Q	G	S	G	V	A	F	D	N	E	K	F	A	Y
Query Conservation																																													.	.	.
Alig confidence																																													.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	P	W	R	I	A	L	A	Y	Y	Q	E	G	P	V	D	Y	S	A	G	K	R	G	T	W	F	D	R	P	E	L	E	V	H	Y	Q	F	L	E	N	D	D	F	S	F	G	L	T	G	G	F	R	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	G	Y	H	Y	V	D	E	P	G
Template Known Secondary structure		T	T															T	T	T	T				S																	S	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S		T	T
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.																		.	.	.	.	.	.	100	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.			330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure																											.																			.	.
Query SS confidence																											.																			.	.
Query Sequence		N	I	N	N	N	G	H	M	L	R	I	L	D	H	G	A	I	S	M	G	D	N	W	D	M	.	M	Y	V	G	M	Y	Q	D	I	N	W	D	N	D	N	G	T	K	.	.	W	W	T	V	G	I	R	P	M	Y	K	W	T	P	I	M	S	T	V	M	E	I	G	Y	D	N	V	E	S	Q	R	T	G	D
Query Conservation																											.																			.	.
Alig confidence																											.																			.	.																							.
Template Conservation																																																																						.
Template Sequence		K	D	T	A	N	M	Q	R	W	K	I	A	P	D	W	D	V	K	L	T	D	D	L	R	F	N	G	W	L	S	M	Y	K	F	A	N	D	L	N	T	T	G	Y	A	D	T	R	V	E	T	E	T	G	L	Q	Y	T	F	N	E	T	V	A	L	R	V	N	Y	.	Y	L	E	R	G	F	N	M	D	D	S
Template Known Secondary structure																					S	S	S														S									S														S	S	S	B							.								S	S	T	T
Template Predicted Secondary structure																																																																						.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.
						364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	K	N	N	Q	Y	K	I	T	L	A	Q	Q	W	Q	A	G	D	S	I	W	S	R	P	A	I	R	V	F	A	T	Y	A	K	W	D	E	K	W	G	Y	D	Y	T	G	N	A	D	N	N	A	N	F	G	K	A	V	P	A	D	F	N	G	G	S	F	G	R	G	D	S	D	E	W	T	F	G
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																		.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	N	N	G	E	F	S	T	Q	E	I	R	A	Y	L	P	L	T	L	G	N	.	H	S	V	T	P	Y	T	R	I	G	L	D	R	W	S	N	W	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	Q	D	D	I	E	R	E	G	H	D	F	N	R	V	G
Template Known Secondary structure				T	T																T	T	.																	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T			S
Template Predicted Secondary structure																							.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.																									.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		440	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	M	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	Y	G	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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