|   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | S | R | Y | V | P | D | M | G | D | L | I | W | V | D | F | D | P | T | K | G | S | E | Q | A | G | H | R | P | A | V | V | L | S | P | F | M | Y | N | N | K | T | G | M | C | L | C | V | P | C | T | T | Q | S | K | G | Y | P | F | E | V | V | L | S | G | Q | E | R | D | G | V | A | L | A | D | Q | V | K | S | I |
Query Conservation |   |
  |   |   |   |   |
|
|
|
|
|
|   |   |
|   |
|   |   |   |   |
|   |
|   |   |
|   |
|
|   |
|
|
|
|   |   |   |   |
|   |   |   |   |   |
|
|
|   |
|
|
|
|   |   |   |   |   |   |   |   |
|   |
|   |   |
|   |   |   |
|   |
|   |   |   |
|
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|   |
|
|
|
|   |   |
|   |   |   |
| . | . | . | . | . | . | . |
|   |
|
|   |
|
|
|
|   |
|   |   |
|   |   |   |   |   |
|
|
|   |
|
|
|
|   |   |   |   |   |
|   |   |
|   |
|   |   |
|   |   |   |
|   |
|   |   |   |
|
|   |
|
|
Template Sequence |   |
V | S | R | Y | V | P | D | M | G | D | L | I | W | V | D | F | D | P | . |
. |
. |
. |
. |
. |
. |
G | H | R | P | A | V | V | L | S | P | F | M | Y | N | N | K | T | G | M | C | L | C | V | P | C | T | T | Q | S | K | G | Y | P | F | E | V | V | L | S | G | Q | E | R | D | G | V | A | L | A | D | Q | V | K | S | I |
Template Known Secondary structure |   |
|
|
|
|
|
|
| T | T |  |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . |
|  |  |  |  |  |  |
| S |
|  |  |  |  |  |  |  | S |
|  |  |  |  |  |  |  | S |
|
|
|
|
| T | T |  |  |  |  |
| S | S | S | S |
|  |  |  |  | T | T |
|
|  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . |
  |
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | W | R | A | R | G | A | T | K | K | G | T | V | A | P | E | E | L | Q | L | I | K | A | K | I | N | V | L | I | G |
Query Conservation |   |
|   |
|   |
|   |   |   |   |
|
|   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |
|   |   |   |   |
|
|   |
|   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |
|
|
Template Sequence |   |
A | W | R | A | R | G | A | T | K | K | G | T | V | A | P | E | E | L | Q | L | I | K | A | K | I | N | V | L | I | G |
Template Known Secondary structure |   |
|  |  |  |  | T |
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . |
  |