Job Description P0AFP6 Confidence 99.85% Date Thu Jan 5 11:26:55 GMT 2012 Rank 7 Aligned Residues 220 % Identity 20% Template c3rxyA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:nif3 protein; PDBTitle: crystal structure of nif3 superfamily protein from sphaerobacter2 thermophilus Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	N	T	E	L	E	Q	L	I	N	E	K	L	N	S	A	A	I	S	D	Y	A	P	N	G	L	Q	V	E	G	K	E	T	V	Q	K	I	V	T	G	V	T	A	S	Q	A	L	L	D	E	A	V	R	L	G	A	D	A	V	I	V	H	H	G	Y	F	W	K	G	E	S	P	V	I	R	G	M	K	R
Query Conservation
Alig confidence																						.	.												.																																									.
Template Conservation																						.	.												.																																									.
Template Sequence		L	S	T	A	E	L	V	D	I	A	L	E	X	A	E	X	R	T	L	P	.	.	A	D	S	A	V	Y	V	E	S	T	D	.	L	K	R	V	X	X	G	I	D	I	G	P	A	E	L	L	L	A	R	Q	L	G	C	D	G	V	I	A	H	H	P	A	G	G	S	A	T	L	N	F	.	P	E	V	L	T
Template Known Secondary structure		B													T	T		S	S			.	.	T	T								S		.	B	S						S	S												T	T		S					S	S			S							G	.	G	G	G	G	G
Template Predicted Secondary structure																						.	.												.																																									.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.			.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.
		81	.	.	.	.	.	.	.	.																																						90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	R	L	K	T	L	L	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	N	L	Y	G	W	H	L	P	L	D	A	H	P	E	L	G	N	N	A	Q	L	A	A	L	L	G	I	T	V	M	G	E
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		R	H	V	E	L	X	V	E	H	G	V	P	A	T	A	A	R	D	A	I	Q	G	L	L	T	R	S	L	L	R	A	Q	S	A	N	H	D	H	T	P	S	V	A	R	L	L	E	X	P	F	L	N	I	H	L	P	L	D	E	V	G	R	R	I	X	V	K	T	I	Q	E	A	V	E	.	.	.	.	.	.
Template Known Secondary structure										T	T																								S		T	T										T																											G	.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.			150	.	.	.	.	.	.	.				.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.					.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																												.	.									.	.	.																			.	.	.	.
Query SS confidence																												.	.									.	.	.																			.	.	.	.
Query Sequence		I	E	P	L	V	P	W	G	E	L	T	M	P	V	P	G	L	E	L	A	S	W	I	E	A	R	.	.	L	G	R	K	P	L	W	C	.	.	.	G	D	T	G	P	E	V	V	Q	R	V	A	W	C	T	G	G	G	.	.	.	.	Q	S	F	I	D	S	A	A	R	F	G	V	D	A	F	I	T	G	E
Query Conservation																												.	.									.	.	.																			.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																			.	.									.	.	.																			.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	P	L	G	D	E	A	R	V	Q	D	A	I	D	A	L	X	T	L	P	E	F	A	G	A	A	T	R	I	X	V	P	V	G	A	V	D	Q	P	L	G	K	I	A	V	V	H	G	A	G	T	N	G	G	Y	A	V	A	R	A	Y	F	D	H	G	V	R	T	V	L	Y	I	H
Template Known Secondary structure		.	.	.	.	.	.	.	.	G	G	G	G	G		B									T	T	S					S		S	S							S		T	T	S	B			S						S	S	S	S													T	T							S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.
Template SS confidence
										154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		195	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		V	S	E	Q	T	I	H	.	S	A	R	E	Q	G	L	H	F	Y	A	A	G	H	H	A	T	E	R	G	G	I	R	A	L	S	E	W	L	N	E	N	T	D	L	D	V	T
Query Conservation									.
Alig confidence									.																																	.
Template Conservation																																										.
Template Sequence		I	A	P	E	E	A	E	R	L	R	R	E	G	G	G	N	L	I	V	T	G	H	I	A	S	D	L	V	G	I	N	R	Y	V	Q	A	L	E	E	R	.	G	V	E	V	V
Template Known Secondary structure															S	S																									T	.	T
Template Predicted Secondary structure																																										.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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