Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFP6
Confidence66.01%DateThu Jan 5 11:26:55 GMT 2012
Rank16Aligned Residues118
% Identity22%Templatec3d0cB_
PDB info PDB header:lyaseChain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 oceanobacillus iheyensis at 1.9 a resolution
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   47..50.........60.........70.........80.........90.........100.........110.........120......
Predicted Secondary structure 






































Query SS confidence 















































































Query Sequence  ALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDAHPELGNNAQLAALLGITVMGEIEP
Query Conservation   

  

    







  
              
  
    
 

  

  
     
 
  

  


        
Alig confidence 







































...











..............










Template Conservation    
  
   


 


 

 
   
   
      

   ...  

 


 
  ..............        
  
Template Sequence  ELGKSAIDSGADCVXIHQPVHPYITDAGAVEYYRNIIEAL. . . DAPSIIYFKDAH. . . . . . . . . . . . . . LSDDVIKELAP
Template Known Secondary structure  TT
S




S


S...SS


TT..............S
TTT
Template Predicted Secondary structure 












...






..............


Template SS confidence 















































































   95....100.........110.........120.........130.... .....140...... ...150.......
 
   127..130.........140.........150.........160.........170.........180.........190...
Predicted Secondary structure 























Query SS confidence 


































































Query Sequence  LVPWGELTMPVPGLELASWIEARLGRKPLWCGDTGPEVVQRVAWCTGGGQSFIDSAARFGVDAFITG
Query Conservation   
  
 
    
  

   

       
   
     
  


  


 
 
  
   
 
  


Alig confidence 
























............





























Template Conservation   
 




    
            ............         
     
      
  
 

 
Template Sequence  LDKLVGIKYAINDIQRVTQVXRAVP. . . . . . . . . . . . KSSNVAFICGTAEKWAPFFYHAGAVGFTSG
Template Known Secondary structure 
TT



S
............GGG

TTT

S
Template Predicted Secondary structure 









............









Template SS confidence 


































































   158.160.........170.........180.. .......190.........200.........210..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions