Job Description P0AFP6 Confidence 100.00% Date Thu Jan 5 11:26:55 GMT 2012 Rank 2 Aligned Residues 244 % Identity 23% Template c2nydB_ PDB info PDB header:unknown function Chain: B: PDB Molecule:upf0135 protein sa1388; PDBTitle: crystal structure of staphylococcus aureus hypothetical protein sa1388 Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		M	K	N	T	E	L	E	Q	L	I	N	E	K	L	N	S	A	A	I	S	D	Y	A	P	N	G	L	Q	V	E	G	K	.	E	T	V	Q	K	I	V	T	G	V	T	A	S	Q	A	L	L	D	E	A	V	R	L	G	A	D	A	V	I	V	H	H	G	Y	F	W	K	G	E	S	P	V	I	R	G	M	K
Query Conservation																																		.
Alig confidence																																		.
Template Conservation
Template Sequence		M	K	I	A	D	L	M	T	L	L	D	H	H	V	P	F	S	T	A	E	S	W	D	N	V	G	L	L	I	G	D	E	D	V	E	V	T	G	V	L	T	A	L	D	C	T	L	E	V	V	N	E	A	I	E	K	G	Y	N	T	I	I	S	H	H	P	L	I	F	K	G	V	T	S	L	K	A	N	G	Y
Template Known Secondary structure			B												S		G	G	G	S		T	T								S		T	T	S	B								S	S													T							S	S		S	S		S			S				S	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	N	R	L	K	T	L	L	A	N	D	I	N	L	Y	G	W	H	L	P	L	D	A	H	P	E	L	G	N	N	A	Q	L	A	A	L	L	G	I	T	V	M	G	E	I	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.
Template Sequence		G	L	I	I	R	K	L	I	Q	H	D	I	N	L	I	A	M	H	T	N	L	D	V	N	P	.	Y	G	V	N	M	M	L	A	K	V	M	G	L	K	N	I	S	I	I	N	N	Q	Q	D	V	Y	Y	K	V	Q	T	Y	I	P	K	D	N	V	G	P	F	K	D	K	L	S	E	N	G	L	A	Q	E	G
Template Known Secondary structure											T	T												S	S	T	.	T	S									T	T								S															S	T	T												T	S	S		S
Template Predicted Secondary structure																											.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
																																																										127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	P	W	G	E	L	T	M	P	V	P	G	L	E	L	A	S	W	I	E	A	R	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	Y	E	Y	C	F	F	E	S	E	D	V	D	E	V	K	I	E	F	M	I	D	A	Y	Q	K	S	R	A	E	Q	L	I	K	Q	Y	H	P	Y	E	T	P	V	F	D	F	I	E	I	K	Q	T	S	L	Y	G	L	G	V	M	A	E	V	D	N	Q	M	T	L	E	D	F	A	A	D	I	K	S	K	L
Template Known Secondary structure																								T	T	T														S	S	S																S																							T
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	K	P	L	W	C	G	D	T	G	P	E	V	V	Q	R	V	A	W	C	T	G	G	G	Q	S	F	I	D	S	A	A	R	F	G	V	D	A	F	I	T	G	E	V	S	E	Q	T	I	H	S	A	R	E	Q	G	L	H	F	Y	A	A	G	H	H	A	T	E	R	G	G	I	R	A	L	S	E	W	L
Query Conservation
Alig confidence																																																																				.
Template Conservation																																																																				.
Template Sequence		N	I	P	S	V	R	F	V	G	E	S	N	Q	K	I	K	R	I	A	I	I	G	G	S	G	I	G	Y	E	Y	Q	A	V	Q	Q	G	A	D	V	F	V	T	G	D	I	K	H	H	D	A	L	D	A	K	I	H	G	V	N	L	I	D	I	N	H	Y	.	S	E	Y	V	M	K	E	G	L	K	T	L	L
Template Known Secondary structure		T		S						S		T	T											S	S		T	T	S							T	T		S					S													T	T								G	G	.	G	G	G	G
Template Predicted Secondary structure																																																																				.
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340
		231	.	.	.				.	.	.	.	.	240	.	.	.	.				.	.
Predicted Secondary structure						.	.	.											.	.	.
Query SS confidence						.	.	.											.	.	.
Query Sequence		N	E	N	T	.	.	.	D	L	D	V	T	F	I	D	I	P	.	.	.	N	P
Query Conservation						.	.	.											.	.	.
Alig confidence						.	.	.											.	.	.
Template Conservation
Template Sequence		M	N	W	F	N	I	E	K	I	N	I	D	V	E	A	S	T	I	N	T	D	P
Template Known Secondary structure								T	T														S
Template Predicted Secondary structure
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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