Job Description P0AFP6 Confidence 100.00% Date Thu Jan 5 11:26:55 GMT 2012 Rank 3 Aligned Residues 244 % Identity 25% Template c2gx8B_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:nif3-related protein; PDBTitle: the crystal stucture of bacillus cereus protein related to nif3 Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1		.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.
Predicted Secondary structure			.																																.																																												.
Query SS confidence			.																																.																																												.
Query Sequence		M	.	K	N	T	E	L	E	Q	L	I	N	E	K	L	N	S	A	A	I	S	D	Y	A	P	N	G	L	Q	V	E	G	K	.	E	T	V	Q	K	I	V	T	G	V	T	A	S	Q	A	L	L	D	E	A	V	R	L	G	A	D	A	V	I	V	H	H	G	Y	F	W	K	G	E	S	P	V	I	.	R	G
Query Conservation			.																																.																																												.
Alig confidence			.																																.																																												.
Template Conservation
Template Sequence		I	P	N	G	H	E	I	I	S	L	F	E	S	M	Y	P	K	H	L	A	M	E	G	D	K	I	G	L	Q	I	G	A	L	N	K	P	V	R	H	V	L	I	A	L	D	V	T	E	E	V	V	D	E	A	I	Q	L	G	A	N	V	I	I	A	H	H	P	L	I	F	N	P	L	K	A	I	H	T	D	K
Template Known Secondary structure				B												S		G	G	G	S		T	T								S		S	S	S	B		S						S	S													T							S	S		S		S	S			S				T	T	S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	K	R	N	R	L	K	T	L	L	A	N	D	I	N	L	Y	G	W	H	L	P	L	D	A	H	P	E	L	G	N	N	A	Q	L	A	A	L	L	G	I	T	V	M	G	E	I	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.
Template Sequence		A	Y	G	K	I	I	E	K	C	I	K	N	D	I	A	I	Y	A	A	H	T	N	V	D	V	A	K	.	G	G	V	N	D	L	L	A	E	A	L	G	L	Q	N	T	E	V	L	A	P	T	Y	A	E	E	M	K	K	V	V	V	F	V	P	V	T	H	A	E	E	V	R	K	A	L	G	D	A	G	A	G
Template Known Secondary structure													T	T													S	T	.	T	S										T																								G	G	G											T	T
Template Predicted Secondary structure																													.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
																																																																									127	.	.	130	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	P	W	G	E	L	T	M
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	I	G	N	Y	S	H	C	T	F	S	S	E	G	T	G	T	F	V	P	Q	Q	L	E	R	V	E	E	V	R	I	E	T	I	I	P	A	S	L	Q	R	K	V	I	K	A	M	V	T	A	H	P	Y	E	E	V	A	Y	D	V	Y	P	L	D	N	K	G	E	T	L	G	L	G	K	I	G	Y	L	Q	E
Template Known Secondary structure			B	T	T	B		S																														G	G	G										T	T		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	P	G	L	E	L	A	S	W	I	E	A	R	L	G	R	K	P	L	W	C	G	D	T	G	P	E	V	V	Q	R	V	A	W	C	T	G	G	G	Q	S	F	I	D	S	A	A	R	F	G	V	D	A	F	I	T	G	E	V	S	E	Q	T	I	H	S	A	R	E	Q	G	L	H	F	Y	A	A	G	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	M	T	L	G	Q	F	A	E	H	V	K	Q	S	L	D	V	K	G	A	R	V	V	G	K	L	D	D	K	V	R	K	V	A	V	L	G	G	D	G	N	K	Y	I	N	Q	A	K	F	K	G	A	D	V	Y	V	T	G	D	M	Y	Y	H	V	A	H	D	A	M	M	L	G	L	N	I	V	D	P	G	H
Template Known Secondary structure																T	T		S						S		T	T	S													G	G	G							T	T		S						S													T								G
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.						.	.	.	.	.	240	.	.	.	.		.	.
Predicted Secondary structure																					.	.	.	.	.											.
Query SS confidence																					.	.	.	.	.											.
Query Sequence		H	A	T	E	R	G	G	I	R	A	L	S	E	W	L	N	E	N	T	.	.	.	.	.	D	L	D	V	T	F	I	D	I	P	.	N	P
Query Conservation																					.	.	.	.	.											.
Alig confidence			.																		.	.	.	.	.											.
Template Conservation			.
Template Sequence		N	.	V	E	K	V	M	K	Q	G	V	Q	K	Q	L	Q	E	K	V	D	A	K	K	L	N	V	H	I	H	A	S	Q	L	H	T	D	P
Template Known Secondary structure		G	.	G	G	G																	T	T	B
Template Predicted Secondary structure			.
Template SS confidence
		334		.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions