Job Description P0AGG0 Confidence 100.00% Date Thu Jan 5 11:29:00 GMT 2012 Rank 15 Aligned Residues 283 % Identity 20% Template c2z1eA_ PDB info PDB header:transferase Chain: A: PDB Molecule:hydrogenase expression/formation protein hype; PDBTitle: crystal structure of hype from thermococcus kodakaraensis (outward2 form) Resolution 1.55 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		G	I	G	D	D	C	A	L	L	N	I	P	E	K	Q	T	L	A	I	S	T	D	T	L	V	A	G	N	H	F	L	P	D	I	D	P	A	D	L	A	Y	K	A	L	A	V	N	L	S	D	L	A	A	M	G	A	D	P	A	W	L	T	L	A	L	T	L	P	.	D	V	D	E	A	W	L	E	S	F	S
Query Conservation																																																																						.
Alig confidence																	.															.	.	.																																				.
Template Conservation																	.															.	.	.
Template Sequence		G	E	L	D	D	G	A	T	I	P	F	G	D	K	H	.	I	V	F	T	I	D	G	H	T	V	K	P	L	F	.	.	.	F	P	G	G	D	I	G	R	L	A	V	S	G	T	V	N	D	L	A	V	M	G	A	E	P	I	A	L	A	N	S	M	I	I	G	E	G	L	D	M	E	V	L	K	R	V	L
Template Known Secondary structure						S							T	T			.											S	S	S		.	.	.		T	T																	T	T	T														T	T
Template Predicted Secondary structure																	.															.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40	.				.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.			.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		D	S	L	F	D	L	L	N	Y	Y	D	M	Q	L	I	G	G	D	T	T	R	G	P	.	.	L	S	M	T	L	G	I	H	G	F	V	P	M	G	R	A	L	T	R	S	G	A	K	P	G	D	W	I	Y	V	T	G	T	P	G	D	S	A	A	G	L	A	I	L	Q	N	R	L	Q	V	A	D	A	K	D
Query Conservation																									.	.
Alig confidence																									.	.
Template Conservation
Template Sequence		K	S	M	D	E	T	A	R	E	V	P	V	P	I	V	T	G	D	T	K	V	V	E	D	K	I	E	M	F	V	I	T	A	G	I	G	I	A	E	H	P	V	S	D	A	G	A	K	V	G	D	A	V	L	V	S	G	T	I	G	D	H	G	I	A	L	M	S	H	R	E	G	I	A	F	E	T	E	L	K
Template Known Secondary structure											T	T												S	S	S														S	S				T	T				T	T						S	S		S	S											T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		A	D	Y	L	I	K	R	H	L	R	P	S	P	R	I	L	Q	G	Q	A	L	R	D	L	A	N	S	A	I	D	L	S	.	D	G	L	I	S	D	L	G	H	I	V	K	A	S	D	C	G	A	R	I	D	L	A	L	L	P	F	S	D	A	L	S	R	H	V	E	P	E	Q	A	L	R	W	A	L	S	G
Query Conservation																																		.
Alig confidence				.	.																	.												.																																											.	.
Template Conservation				.	.																	.																																																							.	.
Template Sequence		S	D	.	.	V	A	P	I	W	D	V	V	K	A	V	A	E	T	I	G	.	W	E	N	I	H	A	M	K	D	P	T	R	A	G	L	S	N	A	L	N	E	I	A	R	K	S	N	V	G	I	L	V	R	E	A	D	I	P	I	R	P	E	V	R	A	A	S	E	M	L	G	I	S	P	.	.	Y	D	V
Template Known Secondary structure				.	.																	.	G	G	G									T	T														T							G	G	G	S														T			G	.	.	G	G	S
Template Predicted Secondary structure				.	.																	.																																																							.	.
Template SS confidence
		195	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.			.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.			310	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.																								.	.
Query SS confidence																											.	.																								.	.
Query Sequence		G	E	D	Y	E	L	C	F	T	V	P	E	L	N	R	G	A	L	D	V	A	L	G	H	L	.	.	G	V	P	F	T	C	I	G	Q	M	T	A	D	I	E	G	L	C	F	I	R	D	G	.	.	E	P	V	T	L	D	W	K
Query Conservation																											.	.																								.	.
Alig confidence																											.	.																								.	.
Template Conservation
Template Sequence		A	N	E	G	K	V	V	M	V	V	A	R	E	Y	A	E	E	A	L	E	A	M	R	K	T	E	K	G	R	N	A	A	I	I	G	E	V	I	A	D	Y	R	G	K	V	L	L	E	T	G	I	G	G	K	R	F	M	E	P	P
Template Known Secondary structure				S	S								G	G	G										T	S	S	T	T	T	T									S	S	S	T	T							T	T	S								S
Template Predicted Secondary structure
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions