 |
Job Description | P30958 | Confidence | 99.68% | Date | Thu Jan 5 11:46:49 GMT 2012 |
Rank | 118 | Aligned Residues | 121 |
% Identity | 17% | Template | d1a1va1 |
SCOP info | P-loop containing nucleoside triphosphate hydrolases
| P-loop containing nucleoside triphosphate hydrolases
| RNA helicase
|
Resolution | 2.20 |
|
 |
  |   |
622 | . | . | . | . | . | . | . | 630 | . | . | . | . | . | . | . | . | . | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660 | . | . | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . |
Predicted Secondary structure |   |
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | D | R | L | V | C | G | D | V | G | F | G | K | T | E | V | A | M | R | A | A | F | L | A | V | D | N | H | K | Q | V | A | V | L | V | P | T | T | L | L | A | Q | Q | H | Y | D | N | F | R | D | R | F | A | N | W | P | V | R | I | E | M | I | S | R | F | R | S | A | K | E | Q | T | Q | I | L | A | E | V | A | E |
Query Conservation |   |
|
|
|
|
|   |
|
|
|
|   |
|
|
|
|
|
|   |   |
|
|   |   |
|   |   |   |
|
|
|
|   |
|
|
|
|
|   |   |
|
|   |
|   |   |   |   |
|   |   |
|
|   |   |   |   |
|   |
|   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
  |   |   |
|
|   |
|
|
|
|
|
|
|
|   |   |   |   |   |   |   | . | . | . |   |   |   |   |   |   |   |
|
|   |   |
|
|   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . |
Template Sequence |   |
Q | V | A | H | L | H | A | P | T | G | S | G | K | S | T | K | V | P | A | A | Y | . |
. |
. |
A | A | Q | G | Y | K | V | L | V | L | N | P | S | V | A | A | T | L | G | F | G | A | Y | M | S | K | A | H | G | V | D | P | N | I | R | T | G | V | R | T | I | T | T | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Template Known Secondary structure |   |
 |  |  |  |  |  |
|
| T | T | S |
| T | T | T |  |  |  |  |  |  | . | . | . |  | T | T | T |
|
|  |  |  |  |  | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
|
|
|  |  |  |
| S | S |
|  |  |
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  | . | . | . |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
198 | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | |
|
|
. | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
  |
  |   |
702 | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | . | . | 720 | . | . | . | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | . | . | 740 | . | . | |
|
|
|
|
|
. | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | K | I | D | I | L | I | G | T | H | K | L | L | Q | S | D | V | K | F | K | D | L | G | L | L | I | V | D | E | E | H | R | F | G | V | R | H | K | E | R | I | . |
. |
. |
. |
. |
. |
K | A | M | R | A | N | V | D | I | L | T | L | T | A | T | P |
Query Conservation |   |
|   |   |
|
|
|
|
|
|   |   |
|
|   |   |   |   |   |
|   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|
|   |
| . | . | . | . | . | . |   |   |   |   |   |   |   |   |
|
|   |
|
|
|
|
|
Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|
|
Template Sequence |   |
. |
S | P | I | T | Y | S | T | Y | G | K | F | L | A | D | G | G | S | G | G | A | Y | D | I | I | I | C | D | E | C | H | S | T | D | A | T | S | I | L | G | I | G | T | V | L | D | Q | A | E | T | A | G | A | R | L | V | V | L | A | T | A | T | P |
Template Known Secondary structure |   |
. |
| S |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|
|
|
| S |  |  |  |  |  | T | T | T |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T | T | T |
| S |  |  |  |  |  |  | S |
|
|
Template Predicted Secondary structure |   |
. |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
263 | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|