Job Description P30958 Confidence 100.00% Date Thu Jan 5 11:46:49 GMT 2012 Rank 29 Aligned Residues 327 % Identity 15% Template c3kx2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:pre-mrna-splicing factor atp-dependent rna PDBTitle: crystal structure of prp43p in complex with adp Resolution 2.20 Å

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		570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.
Predicted Secondary structure																																																																															.	.	.
Query SS confidence																																																																															.	.	.
Query Sequence		D	I	Y	A	Q	R	A	A	K	E	G	F	A	F	K	H	D	R	E	Q	Y	Q	L	F	C	D	S	F	P	F	E	T	T	P	D	Q	A	Q	A	I	N	A	V	L	S	D	M	C	Q	P	L	A	M	D	R	L	V	C	G	D	V	G	F	G	K	T	E	V	A	M	R	A	A	F	L	A	V	.	.	.
Query Conservation																																																																															.	.	.
Alig confidence																																															.	.	.	.			.	.																									.	.	.
Template Conservation																																															.	.	.	.			.	.
Template Sequence		Q	K	L	E	D	G	K	I	N	P	F	T	G	R	E	F	T	P	K	Y	V	D	I	L	K	I	R	R	E	L	P	V	H	A	Q	R	D	E	F	L	K	L	Y	Q	N	.	.	.	.	N	Q	.	.	I	M	V	F	V	G	E	T	G	S	G	K	T	T	Q	I	P	Q	F	V	L	F	D	E	M	P	H
Template Known Secondary structure							S	S	B		T	T	S	S	S	B													T	T	S	G	G	G	G	G											.	.	.	.		S	.	.								T	T	S	S															G	G
Template Predicted Secondary structure																																															.	.	.	.			.	.
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.					.	110			.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		647	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.		670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.					.	.	.	.	.	.	.	.	720	.
Predicted Secondary structure																									.																																											.	.	.	.
Query SS confidence																									.																																											.	.	.	.
Query Sequence		D	N	H	K	Q	V	A	V	L	V	P	T	T	L	L	A	Q	Q	H	Y	D	N	F	.	R	D	R	F	A	N	W	P	V	R	I	E	M	I	S	R	F	R	S	A	K	E	Q	T	Q	I	L	A	E	V	A	E	G	K	I	D	I	L	I	G	T	H	.	.	.	.	K	L	L	Q	S	D	V	K	F	K
Query Conservation																									.																																											.	.	.	.
Alig confidence																									.																					.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	N	T	Q	V	A	C	T	Q	P	R	R	V	A	A	M	S	V	A	Q	R	V	A	E	E	M	D	V	K	L	G	E	E	V	G	Y	S	I	R	F	E	N	K	.	.	.	.	.	.	.	.	.	.	T	S	N	K	T	I	L	K	Y	M	T	D	G	M	L	L	R	E	A	M	E	D	H	D	L	S
Template Known Secondary structure		G	G	T								S																T	T			B	T	T	T						T	T				.	.	.	.	.	.	.	.	.	.			T	T																			T	T		T
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.											.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		722	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.							.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.
Query Sequence		D	L	G	L	L	I	V	D	E	E	H	R	F	G	V	R	H	.	.	.	.	.	.	K	E	R	I	K	A	M	R	A	N	V	D	I	L	T	L	T	A	T	P	I	P	R	T	L	N	M	A	M	S	G	M	R	D	L	S	I	I	A	T	P	P	A	R	R	L	A	V	K	T	F	V	R	E	Y	D	S
Query Conservation																			.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.																																						.	.	.	.
Template Conservation																																																														.	.	.	.
Template Sequence		R	Y	S	C	I	I	L	D	E	A	H	E	R	T	L	A	T	D	I	L	M	G	L	L	K	Q	V	V	K	R	R	P	D	L	K	I	I	I	M	S	A	T	L	D	A	E	K	F	Q	R	Y	F	N	D	A	P	L	L	A	V	.	.	.	.	P	G	R	T	Y	P	V	E	L	Y	Y	T	P	E	F	Q
Template Known Secondary structure		T									G	G	G																				T	T								S	S	S									T	T	S							.	.	.	.													S	S
Template Predicted Secondary structure																																																														.	.	.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.					.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		796	.	.	.	800	.	.	.	.	.	.	.	.							.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.										.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860
Predicted Secondary structure															.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Query Sequence		M	V	V	R	E	A	I	L	R	E	I	L	R	.	.	.	.	.	.	G	G	Q	V	Y	Y	L	Y	N	D	V	E	N	I	Q	K	A	A	E	R	L	A	E	L	.	.	.	.	.	.	.	.	.	V	P	E	A	R	I	A	I	G	H	G	Q	M	R	E	R	E	L	E	R	V	M	N	D	F	H	H	Q
Query Conservation															.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	D	Y	L	D	S	A	I	R	T	V	L	Q	I	H	A	T	E	E	A	G	D	I	L	L	F	L	T	G	E	D	E	I	E	D	A	V	R	K	I	S	L	E	G	D	Q	L	V	R	E	E	G	C	G	P	L	S	V	Y	P	L	Y	G	S	L	P	P	H	Q	Q	Q	R	I	F	E	P	A	P	E	S
Template Known Secondary structure		S																	S		S								S	S																																		T	T							G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
		861	.	.						.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.									.	.	.	.	.	890	.										.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.																						.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.																						.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.
Query Sequence		R	F	N	.	.	.	.	.	V	L	V	C	T	T	I	I	E	T	G	I	D	I	P	T	A	N	T	I	I	.	.	.	.	.	.	.	.	I	E	R	A	D	H	F	.	.	.	.	.	.	.	.	.	G	L	A	Q	L	H	Q	L	R	G	R	V	G	R	S	H	H	Q	A	Y	A	W	L	L	T	P
Query Conservation					.	.	.	.	.																						.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.																						.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.																	.
Template Conservation																																																																							.
Template Sequence		H	N	G	R	P	G	R	K	V	V	I	S	T	N	I	A	E	T	S	L	T	I	D	G	I	V	Y	V	V	D	P	G	F	S	K	Q	K	V	Y	N	P	R	I	R	V	E	S	L	L	V	S	P	I	S	K	A	S	A	Q	Q	R	A	G	R	A	G	R	T	R	.	P	G	K	C	F	R	L	Y	T
Template Known Secondary structure		S	S	S	S										T					S				T	T																	T	T	T	T																				G	G	G	S	S	S	.	S						S	S
Template Predicted Secondary structure																																																																							.
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.		.	.	.	.	.	.	.	440	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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