Job Description P30958 Confidence 99.77% Date Thu Jan 5 11:46:49 GMT 2012 Rank 97 Aligned Residues 168 % Identity 25% Template c3iuyB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:probable atp-dependent rna helicase ddx53; PDBTitle: crystal structure of ddx53 dead-box domain Resolution 2.40 Å

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		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600		.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650		.	.	.	.	.	.	.	.	.	660
Predicted Secondary structure																				.																																																			.
Query SS confidence																				.																																																			.
Query Sequence		F	K	H	D	R	E	Q	Y	Q	L	F	C	D	S	F	P	F	E	.	T	T	P	D	Q	A	Q	A	I	N	A	V	L	S	D	M	C	Q	P	L	A	M	D	R	L	V	C	G	D	V	G	F	G	K	T	E	V	A	M	R	A	A	F	L	A	V	D	N	H	K	.	Q	V	A	V	L	V	P	T	T	L
Query Conservation																				.																																																			.
Alig confidence															.					.														.	.	.	.				.	.																													.
Template Conservation															.																			.	.	.	.				.	.
Template Sequence		F	Q	Q	Y	P	D	L	L	K	S	I	I	R	.	V	G	I	L	K	P	T	P	I	Q	S	Q	A	W	P	I	I	L	.	.	.	.	Q	G	I	.	.	D	L	I	V	V	A	Q	T	G	T	G	K	T	L	S	Y	L	M	P	G	F	I	H	L	D	S	N	G	P	G	M	L	V	L	T	P	T	R	E
Template Known Secondary structure			T	T											.		T			S														.	.	.	.	T	T		.	.								T	T	S															T					S						S	S
Template Predicted Secondary structure															.																			.	.	.	.				.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.					.	.	.			270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		661	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.						.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.																				.	.
Query SS confidence																																																								.	.	.	.	.																				.	.
Query Sequence		L	A	Q	Q	H	Y	D	N	F	R	D	R	F	A	N	W	P	V	R	I	E	M	I	S	R	F	R	S	A	K	E	Q	T	Q	I	L	A	E	V	A	E	G	K	I	D	I	L	I	G	T	H	K	L	L	.	.	.	.	.	Q	S	D	V	K	F	K	D	L	G	L	L	I	V	D	E	E	H	R	.	.
Query Conservation																																																								.	.	.	.	.																				.	.
Alig confidence													.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.																				.	.
Template Conservation													.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	L	H	V	E	A	E	C	S	K	.	Y	S	Y	K	G	L	K	S	I	C	I	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	I	I	I	A	T	P	G	R	L	N	D	L	Q	M	N	N	S	V	N	L	R	S	I	T	Y	L	V	I	D	E	A	D	K	M	L
Template Known Secondary structure													.				T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S															T	T		S			T	T
Template Predicted Secondary structure													.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340																			.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
					734	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	F	G	V	R	H	K	E	R	I	K	A	M	R	A	N	V	D	I	L	T	L	T	A	T	P	I	P	R	T	L	N	M	A	M	S	G	M	R	D	L	S	I	I
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		D	M	E	F	E	P	Q	I	R	K	I	L	L	D	V	R	P	D	R	Q	T	V	M	T	S	A	T	W	P	D	T	V	R	Q	L	A	L	S	Y	L	K	D	P	M	I	V
Template Known Secondary structure			T	T												S		S	S								S	S														S	S
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions