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Job DescriptionP30958
Confidence100.00%DateThu Jan 5 11:46:49 GMT 2012
Rank34Aligned Residues324
% Identity19%Templatec3i5yA_
PDB info PDB header:hydrolase/rnaChain: A: PDB Molecule:atp-dependent rna helicase mss116; PDBTitle: structure of mss116p bound to ssrna containing a single 5-bru and amp-2 pnp
Resolution2.49 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   586...590.........600 .........610.........620.........630.........640.........650 .......
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Query Sequence  DREQYQLFCDSFPFE. TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK. . . . . . . QVAVLVP
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Template Sequence  DKEIHKAI. TRMEFPGLTPVQQKTIKPILS. . . . SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAP
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   114.....120. ........130.........140.. .......150.........160.........170.........180........
 
   658.660.........670....... ..680.........690.........700.........710......... 720.......
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Query Sequence  TTLLAQQHYDNFRDRFANWP. . . . VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVK. . . . . . FKDLGLLI
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Template Sequence  TRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKL. . . RPNIVIATPGRLIDVLEKYSNKFFRFVDYKV
Template Known Secondary structure  ST
GGGGGS

TTS
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   189190.........200.........210.........220.........230.... .....240.........250.........260.....
 
   728.730.. .......740.........750.........760.........770...... ...780.......
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Query Sequence  VDEEH. . . . . . . . . . . . RFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII. . . . . . . . ATPPARRLAVK
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Template Conservation                    
                                                             
Template Sequence  LDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQS
Template Known Secondary structure  TTSTTT
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TT

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   266...270.........280.........290.........300.........310.........320.........330.........340.....
 
   788.790.........800... ......810.........820.........830..... ....840.........850.........860
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Query Sequence  TFVREYDSMVVREAIL. . . . . . REILRGGQVYYLYNDVENIQKAAERLAELVPE. ARIAIGHGQMRERELERVMNDFHHQ
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Template Sequence  VVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD
Template Known Secondary structure  SSSTTTT


SSTTTS
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   346...350.........360.........370.........380.........390.........400.........410.........420.....
 
   861........870.........880.........890.........900.........910........
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Query Sequence  RFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH
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Template Sequence  ESGILVCTDVGARGMDFPNVHEVLQIGVPS. ELANYIHRIGRTARSGKEGSSVLFICK
Template Known Secondary structure  SS
GGGTSS


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   426...430.........440.........450..... ....460.........470.........480..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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