Job Description P30958 Confidence 100.00% Date Thu Jan 5 11:46:49 GMT 2012 Rank 2 Aligned Residues 446 % Identity 100% Template c3hjhA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair-coupling factor; PDBTitle: a rigid n-terminal clamp restrains the motor domains of the bacterial2 transcription-repair coupling factor Resolution 1.95 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	Y	T	L	P	V	K	A	G	E	Q	R	L	L	G	E	L	T	G	A	A	C	A	T	L	V	A	E	I	A	E	R	H	A	G	P	V	V	L	I	A	P	D	M	Q	N	A	L	R	L	H	D	E	I	S	Q	F	T	D	Q	M	V	M	N	L	A	D	W	E	T	L	P	Y	D	S	F	S	P	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	R	Y	T	L	P	V	K	A	G	E	Q	R	L	L	G	E	L	T	G	A	A	C	A	T	L	V	A	E	I	A	E	R	H	A	G	P	V	V	L	I	A	P	D	M	Q	N	A	L	R	L	H	D	E	I	S	Q	F	T	D	Q	M	V	M	N	L	A	D	W	E	T	L	P	Y	D	S	F	S	P	H
Template Known Secondary structure				S					S	T	T										T	T													S	S	S							S	S														T		S	S										S		T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	I	I	S	S	R	L	S	T	L	Y	Q	L	P	T	M	Q	R	G	V	L	I	V	P	V	N	T	L	M	Q	R	V	C	P	H	S	F	L	H	G	H	A	L	V	M	K	K	G	Q	R	L	S	R	D	A	L	R	T	Q	L	D	S	A	G	Y	R	H	V	D	Q	V	M	E	H	G	E	Y	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	D	I	I	S	S	R	L	S	T	L	Y	Q	L	P	T	M	Q	R	G	V	L	I	V	P	V	N	T	L	M	Q	R	V	C	P	H	S	F	L	H	G	H	A	L	V	M	K	K	G	Q	R	L	S	R	D	A	L	R	T	Q	L	D	S	A	G	Y	R	H	V	D	Q	V	M	E	H	G	E	Y	A	T
Template Known Secondary structure															G	G	G			S	S											B											T						T	T															T	T					S	S			S	T	T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	A	L	L	D	L	F	P	M	G	S	E	L	P	Y	R	L	D	F	F	D	D	E	I	D	S	L	R	V	F	D	V	D	S	Q	R	T	L	E	E	V	E	A	I	N	L	L	P	A	H	E	F	P	T	D	K	A	A	I	E	L	F	R	S	Q	W	R	D	T	F	E	V	K	R	D	P	E	H	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	G	A	L	L	D	L	F	P	M	G	S	E	L	P	Y	R	L	D	F	F	D	D	E	I	D	S	L	R	V	F	D	V	D	S	Q	R	T	L	E	E	V	E	A	I	N	L	L	P	A	H	E	F	P	T	D	K	A	A	I	E	L	F	R	S	Q	W	R	D	T	F	E	V	K	R	D	P	E	H	I
Template Known Secondary structure			T	T							B	T		S	S								T	T										T	T	T	T							S					B		S	S	S	S			S															S				S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Q	Q	V	S	K	G	T	L	P	A	G	I	E	Y	W	Q	P	L	F	F	S	E	P	L	P	P	L	F	S	Y	F	P	A	N	T	L	L	V	N	T	G	D	L	E	T	S	A	E	R	F	Q	A	D	T	L	A	R	F	E	N	R	G	V	D	P	M	R	P	L	L	P	P	Q	S	L	W	L	R	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	Q	Q	V	S	K	G	T	L	P	A	G	I	E	Y	W	Q	P	L	F	F	S	E	P	L	P	P	L	F	S	Y	F	P	A	N	T	L	L	V	N	T	G	D	L	E	T	S	A	E	R	F	Q	A	D	T	L	A	R	F	E	N	R	G	V	D	P	M	R	P	L	L	P	P	Q	S	L	W	L	R	V
Template Known Secondary structure							T	T				T	T	G	G	G	G	G	G	G	G		S	S					G	G	G	G	S		T	T							S																					T	T		T	T	S					G	G	G	T	B
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	L	F	S	E	L	K	N	W	P	R	V	Q	L	K	T	E	H	L	P	T	K	A	A	N	A	N	L	G	F	Q	K	L	P	D	L	A	V	Q	A	Q	Q	K	A	P	L	D	A	L	R	K	F	L	E	T	F	D	G	P	V	V	F	S	V	E	S	E	G	R	R	E	A	L	G	E	L	L	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	E	L	F	S	E	L	K	N	W	P	R	V	Q	L	K	T	E	H	L	P	T	K	A	A	N	A	N	L	G	F	Q	K	L	P	D	L	A	V	Q	A	Q	Q	K	A	P	L	D	A	L	R	K	F	L	E	T	F	D	G	P	V	V	F	S	V	E	S	E	G	R	R	E	A	L	G	E	L	L	A	R
Template Known Secondary structure									T	T	S							S	S						T	T																	S	S	S	S	T	T												S							S		S	S	T	T	T	T	T					G	G
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	I	A	P	Q	R	I	M	R	L	D	E	A	S	D	R	G	R	Y	L	M	I	G	A	A	E	H	G	F	V	D	T	V	R	N	L	A	L	I	C	E	S	D	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	K	I	A	P	Q	R	I	M	R	L	D	E	A	S	D	R	G	R	Y	L	M	I	G	A	A	E	H	G	F	V	D	T	V	R	N	L	A	L	I	C	E	S	D	L	L
Template Known Secondary structure		G	T							S		G	G	G			T	T							S				S					T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450