Job Description P30958 Confidence 99.96% Date Thu Jan 5 11:46:49 GMT 2012 Rank 59 Aligned Residues 307 % Identity 17% Template c3h1tA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:type i site-specific restriction-modification PDBTitle: the fragment structure of a putative hsdr subunit of a type2 i restriction enzyme from vibrio vulnificus yj016 Resolution 2.30 Å

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		566	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	L	L	D	I	Y	A	Q	R	A	A	K	E	G	F	A	F	K	H	D	R	E	Q	Y	Q	L	F	C	D	S	F	P	F	E	T	T	P	D	Q	A	Q	A	I	N	A	V	L	S	D	M	C	Q	P	L	A	M	D	R	L	V	C	G	D	V	G	F	G	K	T	E	V	A	M	R	A	A	F	L	A
Query Conservation
Alig confidence																		.	.	.	.	.	.	.																																	.
Template Conservation																		.	.	.	.	.	.	.																																	.
Template Sequence		D	E	L	F	K	R	L	C	G	D	E	G	I	K	D	E	.	.	.	.	.	.	.	D	L	D	T	L	L	S	P	Y	H	H	V	P	R	Y	Y	Q	Q	I	A	I	N	R	A	V	Q	S	V	L	Q	G	K	.	K	R	S	L	I	T	X	A	T	G	T	G	K	T	V	V	A	F	Q	I	S	W	K	L
Template Known Secondary structure													T			G	G	.	.	.	.	.	.	.	G					T																								T	T		.	S								T	T	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.																																	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.								.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		646	.	.	.	650										.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.
Query Sequence		V	D	N	H	K	.	.	.	.	.	.	.	.	.	Q	V	A	V	L	V	P	T	T	L	L	A	Q	Q	H	Y	D	N	F	R	D	R	F	A	N	W	P	V	R	I	E	M	I	S	R	F	R	S	A	K	E	Q	T	Q	I	L	A	E	V	A	E	G	K	I	D	I	L	I	G	T	H	K	L	L	Q	S
Query Conservation							.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	S	A	R	W	N	R	T	G	D	Y	R	K	P	R	I	L	F	L	A	D	T	F	T	P	F	G	D	A	R	H	K	I	E	G	V	V	K	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	I	Y	F	A	I	Y	Q	S	I	P	G
Template Known Secondary structure				T	T			S	S		S	S	S												T	T	T		S	S									S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S						G	G	G
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.																													.	.	.	.	.	.	.	.	270	.	.	.	.
		717	.	.	720				.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.				760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790
Predicted Secondary structure						.	.	.																																								.	.	.
Query SS confidence						.	.	.																																								.	.	.
Query Sequence		D	V	K	F	.	.	.	K	D	L	G	L	L	I	V	D	E	E	H	R	F	G	V	R	H	K	E	R	I	K	A	M	R	A	N	V	D	I	L	T	L	T	A	T	P	I	.	.	.	P	R	T	L	N	M	A	M	S	G	M	R	D	L	S	I	I	A	T	P	P	A	R	R	L	A	V	K	T	F	V
Query Conservation						.	.	.																																								.	.	.
Alig confidence						.	.	.														.	.	.	.	.	.																					.	.	.
Template Conservation																						.	.	.	.	.	.
Template Sequence		L	Y	K	E	F	P	Q	D	F	F	D	L	I	I	I	D	E	C	H	W	.	.	.	.	.	.	R	E	I	L	E	Y	F	E	P	A	F	Q	I	G	X	T	A	T	P	L	R	E	D	N	R	D	T	Y	R	Y	F	G	N	P	I	Y	T	Y	S	L	R	Q	G	I	D	D	G	F	L	A	P	Y	R	V
Template Known Secondary structure		G	G	G	G	S		T	T	S		S					S					.	.	.	.	.	.							S	T	T	S							S	S		S		T	T	T							S		S		S												T	S	S
Template Predicted Secondary structure																						.	.	.	.	.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.							.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		791	.	.																			.	.	.	.	.	.	800	.	.	.	.	.	.	.	.				.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.									.	.	.	.	.	840	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.																											.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.																											.	.	.	.	.	.	.	.
Query Sequence		R	E	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	S	M	V	V	R	E	A	I	L	R	E	I	L	R	.	.	.	G	G	Q	V	Y	Y	L	Y	N	D	V	E	N	I	Q	K	A	A	E	R	L	A	E	L	V	P	.	.	.	.	.	.	.	.	E	A	R	I	A	I	G
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.																											.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.																											.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	R	V	I	S	E	V	D	A	T	K	D	F	E	R	V	I	A	L	K	A	R	T	D	A	F	A	K	H	L	T	D	F	X	K	R	T	D	R	F	A	K	T	I	V	F	C	V	D	Q	E	H	A	D	E	X	R	R	A	L	N	N	L	N	S	D	L	S	R	K	H	P	D	Y	V	A	R	V	T	S
Template Known Secondary structure							T	T					S										T																	T	T	S							S	S															T					T	T		T	T	S					S	S
Template Predicted Secondary structure
Template SS confidence
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
		842	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.				.	910	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.
Query SS confidence																																																																					.	.	.
Query Sequence		H	G	Q	M	R	E	R	E	L	E	R	V	M	N	D	F	H	H	Q	R	F	N	V	L	V	C	T	T	I	I	E	T	G	I	D	I	P	T	A	N	T	I	I	I	E	R	A	D	H	F	G	L	A	Q	L	H	Q	L	R	G	R	V	G	R	S	H	H	.	.	.	Q	A	Y	A	W	L	L
Query Conservation																																																																					.	.	.
Alig confidence																																																			.																		.	.	.
Template Conservation																																																			.
Template Sequence		E	E	G	K	I	G	K	G	H	L	S	R	F	Q	E	L	E	T	S	T	P	V	I	L	T	T	S	Q	L	L	T	T	G	V	D	A	P	T	C	K	N	V	V	L	A	R	V	V	N	.	S	X	S	E	F	K	Q	I	V	G	R	G	T	R	L	R	E	D	Y	G	K	L	W	F	N	I	I
Template Known Secondary structure		T	T														T	T										S	S	T	T	T	T	T				T	T								S				.										T	T	S				B	G	G	G	T	B	S
Template Predicted Secondary structure																																																			.
Template SS confidence
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.		.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions