Job Description P30958 Confidence 97.61% Date Thu Jan 5 11:46:49 GMT 2012 Rank 171 Aligned Residues 146 % Identity 16% Template c3dmdA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus Resolution 2.21 Å

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		606	.	.	.	610	.	.	.	.	.	.															.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.			.	.	660	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.
Query Sequence		A	Q	A	I	N	A	V	L	S	D	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	Q	P	L	A	M	D	R	L	V	C	G	D	V	G	F	G	K	T	E	V	A	M	R	A	A	F	L	A	V	D	N	H	K	Q	V	A	V	L	V	P	.	.	T	T	L	L	A	Q	Q	H	Y	D	N	F
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.
Template Conservation
Template Sequence		E	E	A	V	K	E	A	V	S	E	I	L	E	T	S	R	R	I	D	L	I	E	E	I	R	K	A	E	K	P	Y	V	I	M	F	V	G	F	N	G	S	G	K	T	T	T	I	A	K	L	A	N	W	L	K	N	H	G	F	S	V	V	I	A	A	S	D	T	F	R	A	G	A	I	E	Q	L	E	E	H
Template Known Secondary structure													T			S											T	S		S										T	T	S	S															T	T										T	T
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.		.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		R	D	R	F	A	N	W	P	V	R	I	E	M	I	S	R	F	R	S	A	K	E	Q	T	Q	I	L	A	E	V	A	E	G	K	I	D	.	I	L	I	G	T	H	K	L	L	Q	S	D	V	K	F	K	D	L	G	L	L	I	V	D	E	E	H	R	F	G	V	R	H	K	E	R	I	K	A	M	R	A	N
Query Conservation																																						.
Alig confidence									.	.																												.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	K	R	I	G	V	K	.	.	V	I	K	H	S	Y	G	A	D	P	A	A	V	A	Y	D	A	I	Q	H	A	K	A	R	G	I	D	V	V	L	I	D	T	A	G	R	S	E	T	N	R	N	L	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	M	K	K	I	A	R	V	T	K	P	N
Template Known Secondary structure					T	T			.	.					S	T	T																		T		S								S	S			S	S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.													S
Template Predicted Secondary structure									.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.															.	.	.	.	.	230	.	.	.	.	.	.	.
		749	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	I	L	T	L	T	A	T	P	I	P	R	T	L	N	M	A	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	I	F	V	G	D	A	L	A	G	N	A	I	V	E	Q	A	R
Template Known Secondary structure									T	T		T	T	T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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