Job Description P30958 Confidence 99.82% Date Thu Jan 5 11:46:49 GMT 2012 Rank 85 Aligned Residues 185 % Identity 22% Template c3dkpA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx52; PDBTitle: human dead-box rna-helicase ddx52, conserved domain i in complex with2 adp Resolution 2.10 Å

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		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600		.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.					.	.	.	650	.	.	.	.	.	.	.
Predicted Secondary structure																				.																																															.	.	.	.
Query SS confidence																				.																																															.	.	.	.
Query Sequence		F	K	H	D	R	E	Q	Y	Q	L	F	C	D	S	F	P	F	E	.	T	T	P	D	Q	A	Q	A	I	N	A	V	L	S	D	M	C	Q	P	L	A	M	D	R	L	V	C	G	D	V	G	F	G	K	T	E	V	A	M	R	A	A	F	L	A	V	.	.	.	.	D	N	H	K	Q	V	A	V	L	V	P
Query Conservation																				.																																															.	.	.	.
Alig confidence															.					.															.	.	.	.			.	.																									.	.	.	.
Template Conservation															.																				.	.	.	.			.	.
Template Sequence		Y	K	I	N	S	R	L	L	Q	N	I	L	D	.	A	G	F	Q	M	P	T	P	I	Q	M	Q	A	I	P	V	M	L	H	.	.	.	.	G	R	.	.	E	L	L	A	S	A	P	T	G	S	G	K	T	L	A	F	S	I	P	I	L	M	Q	L	K	Q	P	A	N	K	G	F	R	A	L	I	I	S	P
Template Known Secondary structure															.	T	T			S														T	.	.	.	.	T		.	.								T	T	S																S			S	S	S								S
Template Predicted Secondary structure															.																				.	.	.	.			.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.					.	.			.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		658	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.								.	.	.	720	.	.	.	.	.	.	.	.	.	730
Predicted Secondary structure																																																													.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.
Query Sequence		T	T	L	L	A	Q	Q	H	Y	D	N	F	R	D	R	F	A	N	W	P	V	R	I	E	M	I	S	R	F	R	S	A	K	E	Q	T	Q	I	L	A	E	V	A	E	G	K	I	D	I	L	I	G	T	H	K	L	L	Q	S	.	.	.	.	.	.	.	D	V	K	F	K	D	L	G	L	L	I	V	D	E
Query Conservation																																																													.	.	.	.	.	.	.
Alig confidence																															.	.	.																												.	.	.	.	.	.	.
Template Conservation																															.	.	.
Template Sequence		T	R	E	L	A	S	Q	I	H	R	E	L	I	K	I	S	E	G	T	G	F	R	I	H	M	I	H	K	A	.	.	.	A	V	A	A	K	K	F	G	P	K	S	S	K	K	F	D	I	L	V	T	T	P	N	R	L	I	Y	L	L	K	Q	D	P	P	G	I	D	L	A	S	V	E	W	L	V	V	D	E
Template Known Secondary structure		S															T	T	T	S											.	.	.					T	T	T	S	T	T	S																				S	S	S		S				T	T							S	S
Template Predicted Secondary structure																															.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.				.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		731	.	.							.	.	.	.	.	.	740	.	.	.	.	.		.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.													.
Query SS confidence					.	.	.	.	.	.													.
Query Sequence		E	H	R	.	.	.	.	.	.	F	G	V	R	H	K	E	R	I	K	A	M	.	R	A	N	V	D	I	L	T	L	T	A	T	P	I	P	R	T	L	N	M	A	M	S	G	M	R	D	L	S	I	I	A
Query Conservation					.	.	.	.	.	.													.
Alig confidence					.	.	.	.	.	.													.
Template Conservation
Template Sequence		S	D	K	L	F	E	D	G	G	F	R	D	Q	L	A	S	I	F	L	A	C	T	S	H	K	V	R	R	A	M	F	S	A	T	F	A	Y	D	V	E	Q	W	C	K	L	N	L	D	N	V	I	S	V	S
Template Known Secondary structure																									T	T								S	S													S	S	S
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions