Job Description P30958 Confidence 100.00% Date Thu Jan 5 11:46:49 GMT 2012 Rank 39 Aligned Residues 260 % Identity 18% Template c2z83A_ PDB info PDB header:viral protein Chain: A: PDB Molecule:helicase/nucleoside triphosphatase; PDBTitle: crystal structure of catalytic domain of japanese2 encephalitis virus ns3 helicase/nucleoside triphosphatase3 at a resolution 1.8 Resolution 1.80 Å

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		616	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.		.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		M	C	Q	P	L	A	M	D	R	L	V	C	G	D	V	G	F	G	K	T	E	V	A	M	R	A	A	F	L	A	V	.	D	N	H	K	Q	V	A	V	L	V	P	T	T	L	L	A	Q	Q	H	Y	D	N	F	R	D	R	F	A	N	W	P	V	R	I	E	M	I	S	R	F	R	S	A	K	E	Q	T	Q
Query Conservation																																	.
Alig confidence							.	.																									.																									.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template Conservation							.	.																																																		.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template Sequence		L	R	K	R	Q	.	.	M	T	V	L	D	L	H	P	G	S	G	K	T	R	K	I	L	P	Q	I	I	K	D	A	I	Q	Q	R	L	R	T	A	V	L	A	P	T	R	V	V	A	A	E	M	A	E	A	L	R	.	.	.	.	.	.	G	L	P	V	R	Y	Q	T	G	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		G	S	T	T		.	.								T	T	S		T	T	T	T												T	T									S											T	T	.	.	.	.	.	.	T	S								.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.																																																		.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template SS confidence
		184	.	.	.	.			.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.							.	.	240	.	.	.	.	.	.
		695	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.				.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.						.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.																							.	.	.	.	.
Query SS confidence																								.	.	.																							.	.	.	.	.
Query Sequence		I	L	A	E	V	A	E	G	K	I	D	I	L	I	G	T	H	K	L	L	Q	S	.	.	.	D	V	K	F	K	D	L	G	L	L	I	V	D	E	E	H	R	F	G	V	R	H	.	.	.	.	.	K	E	R	I	K	A	M	R	A	N	V	D	I	L	T	L	T	A	T	P	I	P	R	T	L	N	M	A
Query Conservation																								.	.	.																							.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.															.	.	.																							.	.	.	.	.																							.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																																																																			.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	N	E	I	V	D	V	M	C	H	A	T	L	T	H	R	L	M	S	P	N	V	P	N	Y	N	L	F	V	M	D	E	A	H	F	T	D	P	A	S	I	A	A	R	G	Y	I	A	T	K	V	E	L	G	E	A	A	A	I	F	M	T	A	T	P	P	G	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.			S															S							S					S	S	T	T			S																T	T	S								S	S		T	T	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																																																			.	.	.	.	.	.
Template SS confidence
										255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		767	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	G	M	R	D	L	S	I	I	A	T	P	P	A	R	R	L	A	V	K	T	F	V	R	E	Y	D	S	M	V	V	R	E	A	I	L	R	E	I	L	R	G	G	Q	V	Y	Y	L	Y	N	D	V	E	N	I	Q	K	A	A	E	R	L	A	E	L	V	P	E	A	R	I	A	I	G	H	G	Q	M	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																																																											.	.
Template Conservation		.	.	.	.	.	.	.	.																																																											.	.
Template Sequence		.	.	.	.	.	.	.	.	T	T	D	P	F	P	D	S	N	A	P	I	H	D	L	Q	D	E	I	P	D	R	A	W	S	S	G	Y	E	W	I	T	E	Y	A	G	K	T	V	W	F	V	A	S	V	K	M	G	N	E	I	A	M	C	L	Q	R	A	.	.	G	K	K	V	I	Q	L	N	R	K	S	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.				S	S				S	S											S	S			S	S										S							S															T	.	.	T							S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																																											.	.
Template SS confidence
										322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.			380	.	.	.	.	.	.	.	.	.	390	.
		847	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.		.	.	.	.	.																.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Predicted Secondary structure																												.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	R	E	L	E	R	V	M	N	D	F	H	H	Q	R	F	N	V	L	V	C	T	T	I	I	E	.	T	G	I	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	A	N	T	I	I	I	E	R	A	D	H	F	G	L	A	Q	L	H	Q	L	R	G	R	V	G	R	S	H	H	Q	A
Query Conservation																												.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.																	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation								.	.	.	.																																																			.
Template Sequence		D	T	E	Y	P	K	.	.	.	.	C	K	N	G	D	W	D	F	V	I	T	T	D	I	S	A	N	F	G	A	S	R	V	I	D	C	R	K	S	V	K	P	T	I	L	E	E	G	E	G	R	V	I	L	G	N	P	S	P	I	.	T	S	A	S	A	A	Q	R	R	G	R	V	G	R	N	P	N	Q	V
Template Known Secondary structure					G	G	G	.	.	.	.	S	S	S				S					S	S						S		S																S	S	S							S					.										T	T	S	S			T	T
Template Predicted Secondary structure								.	.	.	.																																																			.
Template SS confidence
		392	.	.	.	.	.					.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
		911	.	.	.	.	.	.	.	.	920	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	W	L	L	T	P	H	P	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	D	E	Y	H	Y	G	G	A	T	S
Template Known Secondary structure									S
Template Predicted Secondary structure
Template SS confidence
		470	.	.	.	.	.	.	.	.	.	480

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions