Job Description P30958 Confidence 100.00% Date Thu Jan 5 11:46:49 GMT 2012 Rank 42 Aligned Residues 311 % Identity 18% Template c2z0mA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:337aa long hypothetical atp-dependent rna PDBTitle: crystal structure of hypothetical atp-dependent rna2 helicase from sulfolobus tokodaii Resolution 1.90 Å

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		586	.	.	.	590	.	.	.	.	.	.	.	.	.	600		.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		D	R	E	Q	Y	Q	L	F	C	D	S	F	P	F	E	.	T	T	P	D	Q	A	Q	A	I	N	A	V	L	S	D	M	C	Q	P	L	A	M	D	R	L	V	C	G	D	V	G	F	G	K	T	E	V	A	M	R	A	A	F	L	A	V	D	N	H	K	Q	V	A	V	L	V	P	T	T	L	L	A	Q	Q
Query Conservation																	.
Alig confidence												.					.																.	.	.	.	.	.																									.	.	.
Template Conservation												.																					.	.	.	.	.	.																									.	.	.
Template Sequence		N	E	K	I	E	Q	A	I	R	E	.	M	G	F	K	N	F	T	E	V	Q	S	K	T	I	P	L	M	L	Q	G	.	.	.	.	.	.	K	N	V	V	V	R	A	K	T	G	S	G	K	T	A	A	Y	A	I	P	I	L	E	L	.	.	.	G	M	K	S	L	V	V	T	P	T	R	E	L	T	R	Q
Template Known Secondary structure												.	T	T			S														T	T	.	.	.	.	.	.									T	T	S	S													.	.	.	T								S	S
Template Predicted Secondary structure												.																					.	.	.	.	.	.																									.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.							.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.				.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
		665	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710						.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.						.
Predicted Secondary structure																																																.	.	.	.	.																								.	.	.	.	.
Query SS confidence																																																.	.	.	.	.																								.	.	.	.	.
Query Sequence		H	Y	D	N	F	R	D	R	F	A	N	W	P	V	R	I	E	M	I	S	R	F	R	S	A	K	E	Q	T	Q	I	L	A	E	V	A	E	G	K	I	D	I	L	I	G	T	.	.	.	.	.	H	K	L	L	Q	S	D	V	K	F	K	D	L	G	L	L	I	V	D	E	E	H	R	.	.	.	.	.	F
Query Conservation																																																.	.	.	.	.																								.	.	.	.	.
Alig confidence																																				.	.	.	.	.								.	.	.	.	.																								.	.	.	.	.
Template Conservation																																				.	.	.	.	.
Template Sequence		V	A	S	H	I	R	D	I	G	R	Y	M	D	T	K	V	A	E	V	Y	G	G	M	P	Y	K	A	Q	I	N	R	V	R	N	.	.	.	.	.	A	D	I	V	V	A	T	P	G	R	L	L	D	L	W	S	K	G	V	I	D	L	S	S	F	E	I	V	I	I	D	E	A	D	L	M	F	E	M	G	F
Template Known Secondary structure										T	T	T	S									T	T	S										T	T	.	.	.	.	.		S															T	T	S			G	G	G		S						S							T	T
Template Predicted Secondary structure																																				.	.	.	.	.
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.						.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		735	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	R	H	K	E	R	I	K	A	M	R	A	N	V	D	I	L	T	L	T	A	T	P	I	P	R	T	L	N	M	A	M	S	G	M	R	D	L	S	I	I	A	T	P	P	A	R	R	L	A	V	K	T	F	V	R	E	Y	D	S	M	V	V	R	E	A	I	L	R	E	I	L	R	G	G	Q	V	Y	Y
Query Conservation
Alig confidence																																																																										.
Template Conservation																																																																										.
Template Sequence		I	D	D	I	K	I	I	L	A	Q	T	S	N	R	K	I	T	G	L	F	S	A	T	I	P	E	E	I	R	K	V	V	K	D	F	I	T	N	Y	E	E	I	E	A	C	I	G	L	A	N	V	E	H	K	F	V	H	V	K	D	D	W	R	S	K	V	Q	A	L	R	E	N	.	K	D	K	G	V	I	V
Template Known Secondary structure													T	T		S							S														S		S							S	G	G	G	G	G									S	S	S	S									T		.			S	S
Template Predicted Secondary structure																																																																										.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.		.	220	.	.	.	.	.
		815	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	N	D	V	E	N	I	Q	K	A	A	E	R	L	A	E	L	V	P	E	A	R	I	A	I	G	H	G	Q	M	R	E	R	E	L	E	R	V	M	N	D	F	H	H	Q	R	F	N	V	L	V	C	T	T	I	I	E	T	G	I	D	I	P	T	A	N	T	I	I	I	E	R	A	D	H	F	G	L	A
Query Conservation
Alig confidence																	.	.	.	.	.	.																																																								.
Template Conservation																	.	.	.	.	.	.																																																								.
Template Sequence		F	V	R	T	R	N	R	V	A	K	L	V	R	L	F	.	.	.	.	.	.	D	N	A	I	E	L	R	G	D	L	P	Q	S	V	R	N	R	N	I	D	A	F	R	E	G	E	Y	D	M	L	I	T	T	D	V	A	S	R	G	L	D	I	P	L	V	E	K	V	I	N	F	D	A	P	Q	.	D	L	R
Template Known Secondary structure				S										T	T		.	.	.	.	.	.	T	T						T	T	S														T	T	S		S										T	T						B	S					S	S			S	.	S
Template Predicted Secondary structure																	.	.	.	.	.	.																																																								.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240							.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.		.	.	.
		895	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	H	Q	L	R	G	R	V	G	R	S	H	H	Q	A	Y	A	W	L	L	T	P	H	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	Y	I	H	R	I	G	R	T	G	R	M	G	R	K	G	E	A	I	T	F	I	L	N	E
Template Known Secondary structure								T	T	B		G	G	G										S	S
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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