Job Description P30958 Confidence 98.50% Date Thu Jan 5 11:46:49 GMT 2012 Rank 149 Aligned Residues 122 % Identity 20% Template c2wjyA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2 orthorhombic form Resolution 2.50 Å

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		599	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650		.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		F	E	T	T	P	D	Q	A	Q	A	I	N	A	V	L	S	D	M	C	Q	P	L	A	M	D	R	L	V	C	G	D	V	G	F	G	K	T	E	V	A	M	R	A	A	F	L	A	V	D	N	H	K	.	Q	V	A	V	L	V	P	T	T	L	L	A	Q	Q	H	Y	D	N	F	R	D	R	F	A	N	W	P
Query Conservation																																																						.
Alig confidence																	.	.	.	.	.						.																											.																						.	.	.	.
Template Conservation																	.	.	.	.	.						.																																																	.	.	.	.
Template Sequence		P	D	L	N	H	S	Q	V	Y	A	V	K	T	V	L	.	.	.	.	.	Q	R	P	L	S	.	L	I	Q	G	P	P	G	T	G	K	T	V	T	S	A	T	I	V	Y	H	L	A	R	Q	G	N	G	P	V	L	V	C	A	P	S	N	I	A	V	D	Q	L	T	E	K	I	H	Q	.	.	.	.	T	G
Template Known Secondary structure																	.	.	.	.	.	T	S	S			.						T	T	S															T	T		S	S							S	S													T	.	.	.	.	T	T
Template Predicted Secondary structure																	.	.	.	.	.						.																																																	.	.	.	.
Template SS confidence
		469	470	.	.	.	.	.	.	.	.	.	480	.	.	.						.	.	.	.	.		.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.					.	.
		678	.	680	.	.	.	.	.	.	.	.																																															.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Query Sequence		V	R	I	E	M	I	S	R	F	R	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	E	Q	T	Q	I	L	A	E	V	A	E	G	K	I	D	I	L	I	G	T	.
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.									.
Template Conservation																																																																								.
Template Sequence		L	K	V	V	R	L	C	A	K	S	R	E	A	I	D	S	P	V	S	F	L	A	L	H	N	Q	I	R	N	M	D	S	M	P	E	L	Q	K	L	Q	Q	L	K	D	E	T	G	E	L	S	S	A	D	E	K	R	Y	R	A	L	K	R	T	A	E	R	E	L	L	M	.	N	A	D	V	I	C	C	T	C
Template Known Secondary structure										G	G	G	G	G				T	T	G	G	G	B							T		T	T												T	T	T	S																								.			S						T
Template Predicted Secondary structure																																																																								.
Template SS confidence
		539	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.		.	610	.	.	.	.	.	.	.
		711	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	K	L	L	Q	S	D	V	K	F	K	D	L	G	L	L	I	V	D	E	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	A	G	D	P	R	L	A	K	M	Q	F	R	S	I	L	I	D	E	S
Template Known Secondary structure		G	G	G	G		T	T	T	T	T				S					T	T	G
Template Predicted Secondary structure
Template SS confidence
		618	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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