Job Description P30958 Confidence 100.00% Date Thu Jan 5 11:46:49 GMT 2012 Rank 49 Aligned Residues 318 % Identity 18% Template c2vsxA_ PDB info PDB header:translation/hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase eif4a; PDBTitle: crystal structure of a translation initiation complex Resolution 2.8 Å

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		582	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600		.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650				.	.	.	.	.	.	.
Predicted Secondary structure																					.																																																			.	.	.
Query SS confidence																					.																																																			.	.	.
Query Sequence		A	F	K	H	D	R	E	Q	Y	Q	L	F	C	D	S	F	P	F	E	.	T	T	P	D	Q	A	Q	A	I	N	A	V	L	S	D	M	C	Q	P	L	A	M	D	R	L	V	C	G	D	V	G	F	G	K	T	E	V	A	M	R	A	A	F	L	A	V	D	N	H	K	.	.	.	Q	V	A	V	L	V	P
Query Conservation																					.																																																			.	.	.
Alig confidence																.					.																.	.	.	.	.	.																														.	.	.
Template Conservation																.																					.	.	.	.	.	.
Template Sequence		D	M	E	L	D	E	N	L	L	R	G	V	F	G	.	Y	G	F	E	E	P	S	A	I	Q	Q	R	A	I	M	P	I	I	E	G	.	.	.	.	.	.	H	D	V	L	A	Q	A	Q	S	G	T	G	K	T	G	T	F	S	I	A	A	L	Q	R	I	D	T	S	V	K	A	P	Q	A	L	M	L	A	P
Template Known Secondary structure		G	G	T											T	.	T	T			S														T	T	.	.	.	.	.	.									T	T	S	S															T	T			S								S
Template Predicted Secondary structure																.																					.	.	.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.							60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		658	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.						.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.
Predicted Secondary structure																																																													.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.
Query Sequence		T	T	L	L	A	Q	Q	H	Y	D	N	F	R	D	R	F	A	N	W	P	V	R	I	E	M	I	S	R	F	R	S	A	K	E	Q	T	Q	I	L	A	E	V	A	E	G	K	I	D	I	L	I	G	T	H	K	L	L	Q	S	.	.	.	.	.	D	V	K	F	K	D	L	G	L	L	I	V	D	E	E	H
Query Conservation																																																													.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	R	E	L	A	L	Q	I	Q	K	V	V	M	A	L	A	F	H	M	D	I	K	V	H	A	C	I	G	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	Q	I	V	V	G	T	P	G	R	V	F	D	N	I	Q	R	R	R	F	R	T	D	K	I	K	M	F	I	L	D	E	A	D
Template Known Secondary structure		S															T	S	S	S											S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S															T	T		S			T	T								S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.																.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		733						.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.						.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.
Predicted Secondary structure			.	.	.	.	.																																																						.	.	.	.	.
Query SS confidence			.	.	.	.	.																																																						.	.	.	.	.
Query Sequence		R	.	.	.	.	.	F	G	V	R	H	K	E	R	I	K	A	M	R	A	N	V	D	I	L	T	L	T	A	T	P	I	P	R	T	L	N	M	A	M	S	G	M	R	D	L	S	I	I	A	T	P	P	A	R	R	L	A	V	.	.	.	.	.	K	T	F	V	R	E	Y	D	S	M	V	V	R	E	A	I
Query Conservation			.	.	.	.	.																																																						.	.	.	.	.
Alig confidence			.	.	.	.	.																																																						.	.	.	.	.
Template Conservation
Template Sequence		E	M	L	S	S	G	F	K	E	Q	I	Y	Q	I	F	T	L	L	P	P	T	T	Q	V	V	L	L	S	A	T	M	P	N	D	V	L	E	V	T	T	K	F	M	R	N	P	V	R	I	L	V	K	K	D	E	L	T	L	E	G	I	K	Q	F	Y	V	N	V	E	E	E	E	Y	K	Y	E	C	L	T	D
Template Known Secondary structure						T	T												S		T	T								S															S	S													S	T	T										S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		803	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	E	I	L	R	G	G	Q	V	Y	Y	L	Y	N	D	V	E	N	I	Q	K	A	A	E	R	L	A	E	L	V	P	E	A	R	I	A	I	G	H	G	Q	M	R	E	R	E	L	E	R	V	M	N	D	F	H	H	Q	R	F	N	V	L	V	C	T	T	I	I	E	T	G	I	D	I	P	T	A	N	T
Query Conservation
Alig confidence																																.	.
Template Conservation																																.	.
Template Sequence		L	Y	D	S	I	S	V	T	Q	A	V	I	F	C	N	T	R	R	K	V	E	E	L	T	T	K	L	R	N	D	.	.	K	F	T	V	S	A	I	Y	S	D	L	P	Q	Q	E	R	D	T	I	M	K	E	F	R	S	G	S	S	R	I	L	I	S	T	D	L	L	A	R	G	I	D	V	Q	Q	V	S	L
Template Known Secondary structure						S			S							S	S														T	.	.	T								T	T	S													T	T	T	S		S						S	G	G	G	S	S					S
Template Predicted Secondary structure																																.	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.			.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		883	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	I	E	R	A	D	H	F	G	L	A	Q	L	H	Q	L	R	G	R	V	G	R	S	H	H	Q	A	Y	A	W	L	L	T	P	H	P	K	A	M	T	T	D	A	Q	K	R	L	E	A	I	A	S	L
Query Conservation
Alig confidence										.															.	.	.	.	.	.											.	.	.	.	.	.
Template Conservation										.															.	.	.	.	.	.											.	.	.	.	.	.
Template Sequence		V	I	N	Y	D	L	P	A	.	N	K	E	N	Y	I	H	R	I	G	R	K	G	V	.	.	.	.	.	.	A	I	N	F	V	T	N	E	D	V	.	.	.	.	.	.	G	A	M	R	E	L	E	K	F
Template Known Secondary structure					S	S			S	.	S	G	G	G	G										.	.	.	.	.	.							S	S	S		.	.	.	.	.	.
Template Predicted Secondary structure										.															.	.	.	.	.	.											.	.	.	.	.	.
Template SS confidence
		332	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.							.	.	.	.	.	.	360	.	.	.							.	.	.	.	.	.	370	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions