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Job DescriptionP30958
Confidence100.00%DateThu Jan 5 11:46:49 GMT 2012
Rank47Aligned Residues326
% Identity19%Templatec2qeqA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:flavivirin protease ns3 catalytic subunit; PDBTitle: crystal structure of kunjin virus ns3 helicase
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   625....630......... 640.........650.........660.........670.........680.........690.........700...
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Query Sequence  LVCGDVGFGKTEVAM. RAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK
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Template Sequence  VLDLHPGAGKTRRILPQIIKEAINRRLRTAVLAPTRVVAAEMAE. . . . ALRGLPIRYQTSAN. . . . . . . . . . . . . . . . GN
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   191........200.........210.........220.........230.... .....240........ .250
 
   704.....710........ .720.........730.........740.. .......750.........760.........770....
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Query Sequence  IDILIGTHKLLQSDV. . . . KFKDLGLLIVDEEHRFGVRHKERI. . . . . KAMRANVDILTLTATPIPRTLNMAMSGMRDLS
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Template Sequence  EIVDVMCHATLTHRLMSPHRVPNYNLFVMDEAHFTDPASIAARGYISTRVELGEAAAIFMTATPPG. . . . . . . . . . . . . .
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   256...260.........270.........280.........290.........300.........310.........320.
 
   775....780.........790.........800.........810.........820.........830.........840.........850....
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Query Sequence  IIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVM
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Template Sequence  TSDPFPESNAPISDLQTEIPDRAWNSGYEWITEYIGKTVWFVPSVKMGNEIALCLQRA. . GKKVIQLNRNDDWDFVVTTD
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   322.......330.........340.........350.........360.........370......... 380.........390.........
 
   855....860... ......870.........880.........890.........900.........910.........920.....
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Query Sequence  NDFHHQRFN. . . . VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTD. . . . .
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Template Sequence  ISEMGANFKASRVIDSRKSVKPTIITEGEGRVILGEPSAV. TAASAAQRRGRTGRNPSQAGDEYCYGGHTNEDDSNCAHW
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   411........420.........430.........440.........450 .........460.........470.........480.........
 
   926...930.........940......... 950.........960.........970.........980.......
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Query Sequence  . . AQKRLEAIASLEDLGAGFALATHD. . LEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALK
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Template Sequence  TEARIMLDNINMPNGLIAQFYQPEREKVYTMDGEYRLRGEERKNFLELLRTADLPVWLAYKVAAAG
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   490.........500.........510.........520.........530.........540.........550.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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