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Job DescriptionP30958
Confidence98.58%DateThu Jan 5 11:46:49 GMT 2012
Rank146Aligned Residues229
% Identity17%Templatec2pjrF_
PDB info PDB header:hydrolase/dnaChain: F: PDB Molecule:protein (helicase pcra); PDBTitle: helicase product complex
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   595....600.........610.........620.........630.........640.........650 .........660.........670
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Query Sequence  DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK. . . . QVAVLVPTTLLAQQHYDNFR
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Template Sequence  EQLLAHLNKEQQEAVRT. . . . . . TEGPL. . LIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQ
Template Known Secondary structure  TTTTTTS

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   706...710.........720.. ..... ..730.........740.........750.........760.........770.......
 
   671.... ....680...... ...690.........700...
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Query Sequence  DRFAN. . WPVRIEMISRF. . . . . . . . . . . . . . . . . . . . RSAKEQTQILAEVAEGK. . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  SLLGGAAEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKEKNIDPKKFEPRTILGTISAAKNELLP
Template Known Secondary structure  TTS
TTSTTSGGGGT

TT


TTS

SSSSS
TTT

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   778.780.........790.........800.........810.........820.........830.........840.........850.......
 
   704.....710.........720.. .......730.........740...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IDILIGTHKLLQSDVKFKD. . . . . LGLLIVDEEHRFGVRHKERIK
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Template Sequence  PEQFAKRASTYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVK
Template Known Secondary structure  S

SSTT
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B
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   858.860.........870.........880.........890.........900.........910.........920.........930.......
 
   744.....750........ .760.........770.........780....
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Query Sequence  AMRANVDILTLTATP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IPRTLNMAMSGMRDLSIIATPPARRL
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Template Sequence  KLAERFQNICAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPKRIWTENPE
Template Known Secondary structure  TTTT


GGG


TTTTB
TT
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   938.940.........950.........960.........970.........980.........990.........1000.........1010.......
 
   785....790....... ..800......... 810.........820.........830.
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Query Sequence  AVKTFVREYDSMV. . . . . VREAILREILRG. . . . GQVYYLYNDVENIQKAAERLAE
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Template Sequence  GKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSRVMEEMLLK
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SSTTSS

GGG




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   1018.1020.........1030.........1040.........1050.........1060.........1070...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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