Job Description P30958 Confidence 96.45% Date Thu Jan 5 11:46:49 GMT 2012 Rank 201 Aligned Residues 197 % Identity 14% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		543	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.							.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590							.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610
Predicted Secondary structure																						.	.	.	.	.	.																													.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.																													.	.	.	.	.	.
Query Sequence		H	K	L	G	G	D	A	W	S	R	A	R	Q	K	A	A	E	K	V	R	.	.	.	.	.	.	D	V	A	A	E	L	L	D	I	Y	A	Q	R	A	A	K	E	G	F	A	F	K	H	D	R	E	Q	Y	.	.	.	.	.	.	Q	L	F	C	D	S	F	P	F	E	T	T	P	D	Q	A	Q	A	I	N
Query Conservation																						.	.	.	.	.	.																													.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.																													.	.	.	.	.	.															.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		G	R	I	T	E	E	D	L	K	A	T	L	R	E	I	R	R	A	L	M	D	A	D	V	N	L	E	V	A	R	D	F	V	E	R	V	R	E	E	A	L	G	K	Q	V	L	E	S	L	T	P	A	E	V	I	L	A	T	V	Y	E	A	L	K	E	A	L	G	G	E	A	R	L	P	.	.	.	.	.	.
Template Known Secondary structure			S																			T	T	T																				T	T	T	T	T		S																		T	T	S	S					.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		611	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.			.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence		A	V	L	S	D	M	C	Q	P	L	A	M	D	R	L	V	C	G	D	V	G	F	G	K	T	E	V	A	M	R	A	A	F	L	A	V	D	N	H	K	Q	V	A	V	L	V	.	.	P	T	T	L	L	A	Q	Q	H	Y	D	N	F	R	D	R	F	A	N	W	P	V	R	I	E	M	I	S	R	F	R	S
Query Conservation																																																.	.
Alig confidence		.	.	.	.	.	.																																									.	.																					.	.
Template Conservation		.	.	.	.	.	.																																																															.	.
Template Sequence		.	.	.	.	.	.	V	L	K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	.	.	V	L	E	V	M	D	G	E	S	P
Template Known Secondary structure		.	.	.	.	.	.				S	S									T	T	S	S															T	T										S	S																T			.	.						T	T
Template Predicted Secondary structure		.	.	.	.	.	.																																																															.	.
Template SS confidence
								94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.			.	.	.	.	160	.	.	.	.	.
		689	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.		.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		A	K	E	Q	T	Q	I	L	A	E	V	A	E	G	K	I	D	.	I	L	I	G	T	H	K	L	L	Q	S	D	V	K	F	K	D	L	G	L	L	I	V	D	E	E	H	R	F	G	V	R	H	K	E	R	I	K	A	M	R	A	N	V	D	I	L	T	L	T	A	T	P	I	P	R	T	L	N	M	A	M
Query Conservation																			.
Alig confidence																			.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	L	A	R	L	K	E	V	L	G	P	D	E	V	L	L	V	L	D	A	M	T	G	Q	E	A	L	S	V	A	R
Template Known Secondary structure																T		S										S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.													S								S	S	S		S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.															200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions