Job Description P30958 Confidence 100.00% Date Thu Jan 5 11:46:49 GMT 2012 Rank 52 Aligned Residues 321 % Identity 17% Template c2i4iA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase ddx3x; PDBTitle: crystal structure of human dead-box rna helicase ddx3x Resolution 2.20 Å

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		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600		.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.
Predicted Secondary structure																				.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	K	H	D	R	E	Q	Y	Q	L	F	C	D	S	F	P	F	E	.	T	T	P	D	Q	A	Q	A	I	N	A	V	L	S	D	M	C	Q	P	L	A	M	D	R	L	V	C	G	D	V	G	F	G	K	T	E	V	A	M	R	A	A	F	L	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																				.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.					.																.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.																					.	.	.	.	.	.
Template Sequence		V	E	M	G	E	I	I	M	G	N	I	E	L	.	T	R	Y	T	R	P	T	P	V	Q	K	H	A	I	P	I	I	K	E	K	.	.	.	.	.	.	R	D	L	M	A	C	A	Q	T	G	S	G	K	T	A	A	F	L	L	P	I	L	S	Q	I	Y	S	D	G	P	G	E	A	L	R	A	M	K	E	N
Template Known Secondary structure		S													.		T			S														T	T	.	.	.	.	.	.									T	T	S
Template Predicted Secondary structure															.																					.	.	.	.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.							.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
								647	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710						.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																																																	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																																																																	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	D	N	H	K	Q	V	A	V	L	V	P	T	T	L	L	A	Q	Q	H	Y	D	N	F	R	D	R	F	A	N	W	P	V	R	I	E	M	I	S	R	F	R	S	A	K	E	Q	T	Q	I	L	A	E	V	A	E	G	K	I	D	I	L	I	G	T	.	.	.	.	.	H	K	L	L	Q
Query Conservation		.	.	.	.	.	.																																																																	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																																					.	.	.	.									.	.	.	.	.
Template Conservation																																																												.	.	.	.
Template Sequence		G	R	Y	G	R	R	K	Q	Y	P	I	S	L	V	L	A	P	T	R	E	L	A	V	Q	I	Y	E	E	A	R	K	F	S	Y	R	S	R	V	R	P	C	V	V	Y	G	G	A	D	I	G	Q	Q	I	R	D	L	E	R	.	.	.	.	G	C	H	L	L	V	A	T	P	G	R	L	V	D	M	M	E	R
Template Known Secondary structure		B	T	T	B	S		S	B			S						S	S																T	T	S	S								S	S	S										T	T	.	.	.	.			S															T
Template Predicted Secondary structure																																																												.	.	.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.					.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		716	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.						.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750					.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.																		.	.	.	.
Query SS confidence																				.	.	.	.	.																		.	.	.	.
Query Sequence		S	D	V	K	F	K	D	L	G	L	L	I	V	D	E	E	H	R	.	.	.	.	.	F	G	V	R	H	K	E	R	I	K	A	M	R	A	N	V	D	.	.	.	.	I	L	T	L	T	A	T	P	I	P	R	T	L	N	M	A	M	S	G	M	R	D	L	S	I	I	A	T	P	P	A	R	R	L	A	V
Query Conservation																				.	.	.	.	.																		.	.	.	.
Alig confidence																				.	.	.	.	.																		.	.	.	.
Template Conservation
Template Sequence		G	K	I	G	L	D	F	C	K	Y	L	V	L	D	E	A	D	R	M	L	D	M	G	F	E	P	Q	I	R	R	I	V	E	Q	D	T	M	P	P	K	G	V	R	H	T	M	M	F	S	A	T	F	P	K	E	I	Q	M	L	A	R	D	F	L	D	E	Y	I	F	L	A	V	G	T	S	E	N	I	T	Q
Template Known Secondary structure		T	S	B			T	T							S	S							T	T										T	S	S	S				B	T	T	B							S															S	S										S	S
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		787	.	.	790	.	.	.	.	.	.	.		.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		K	T	F	V	R	E	Y	D	S	M	V	.	V	R	E	A	I	L	R	E	I	L	R	G	G	Q	V	Y	Y	L	Y	N	D	V	E	N	I	Q	K	A	A	E	R	L	A	E	L	V	P	E	A	R	I	A	I	G	H	G	Q	M	R	E	R	E	L	E	R	V	M	N	D	F	H	H	Q	R	F	N	V	L
Query Conservation													.
Alig confidence													.																																				.	.
Template Conservation																																																	.	.
Template Sequence		K	V	V	W	V	E	E	S	D	K	R	S	F	L	L	D	L	L	N	A	T	G	K	D	S	L	T	L	V	F	V	E	T	K	K	G	A	D	S	L	E	D	F	L	Y	H	E	.	.	G	Y	A	C	T	S	I	H	G	D	R	S	Q	R	D	R	E	E	A	L	H	Q	F	R	S	G	K	S	P	I	L
Template Known Secondary structure								G	G	G											T			T	T								S	S														T	.	.	T								T	T	S															T	S	S
Template Predicted Secondary structure																																																	.	.
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.			.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
		866	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	C	T	T	I	I	E	T	G	I	D	I	P	T	A	N	T	I	I	I	E	R	A	D	H	F	G	L	A	Q	L	H	Q	L	R	G	R	V	G	R	S	H	H	Q	A	Y	A	W	L	L	T	P	H	P
Query Conservation
Alig confidence																											.															.	.
Template Conservation																											.															.	.
Template Sequence		V	A	T	A	V	A	A	R	G	L	D	I	S	N	V	K	H	V	I	N	F	D	L	P	S	.	D	I	E	E	Y	V	H	R	I	G	R	T	G	R	.	.	N	L	G	L	A	T	S	F	F	N	E	R
Template Known Secondary structure									T	T	S											S	S			S	.	S									T	T	B			.	.											G	G
Template Predicted Secondary structure																											.															.	.
Template SS confidence
		496	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520		.	.	.	.	.	.	.	.	.	530	.	.	.	.			.	.	.	.	.	540	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions