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Job DescriptionP30958
Confidence99.95%DateThu Jan 5 11:46:49 GMT 2012
Rank62Aligned Residues319
% Identity16%Templatec1z3iX_
PDB info PDB header:recombination/dna bindingChain: X: PDB Molecule:similar to rad54-like; PDBTitle: structure of the swi2/snf2 chromatin remodeling domain of eukaryotic2 rad54
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   596...600.........610.... .....620.........630.........640......... 650.........660.....
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Query Sequence  SFPFETTPDQAQAINAVLS. . . DMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH. . . . . . . KQVAVLVPTTLLAQQH
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Template Sequence  VLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSP. SSLVRNW
Template Known Secondary structure  TT

TTSSSTT




TTS


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   142.......150.........160.........170.........180.........190.........200.........210... ......220
 
   666...670.........680.........690.........700.... .....710.........720 .........730.... ..
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Query Sequence  YDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI. . . . DILIGTHKLLQSDVKF. . . KDLGLLIVDEEHRF. . GV
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Template Sequence  YNEVGKWLGGR. VQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSD
Template Known Secondary structure  GGG.


SS



SS

S

TTTTTTS


TTGGG

TT
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   221........230. ........240.........250.........260.........270.........280.........290.........
 
   737..740.........750.........760.. ..
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Query Sequence  RHKERIKAMRANVDILTLTATPIPRT. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LN
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Template Sequence  NQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELI
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S
SS
SGGGGGG


TSTT

S
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   300.........310.........320.........330.........340.........350.........360.........370.........
 
   765....770.........780.........790.........800......
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Query Sequence  MAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  SIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYE
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GGGGGGTS





GGGSS
TT



T
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   380.........390.........400.........410.........420.........430.........440.........450.........
 
   807..810.........820.........830.........840.
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIG
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Template Sequence  KCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNR. . RYLYVRL
Template Known Secondary structure  T
TT
TTGGGTS
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   460.........470.........480.........490.........500.........510.........520.........530 .......
 
   842.......850.........860... ......870.........880.........890.........900....... ..910......
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Query Sequence  HGQMRERELERVMNDFHHQRFN. . . VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH. . HQAYAWLLT
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Template Sequence  DGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDW. NPANDEQAMARVWRDGQKKTCYIYRLL
Template Known Secondary structure 
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STT



GGGS
TT


TT
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S.STTSSSTT

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   538.540.........550.........560.........570.........580......... 590.........600.........610......
 
   917..
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Query Sequence  PHP
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Template Sequence  STG
Template Known Secondary structure  TT
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   617..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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